RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 RBAK-RBAKDNI3L0D1 243 aa18.03■□□□□ 0.48
LSM4-206ENST00000600289 BMP15O95972 392 aa18.03■□□□□ 0.48
LSM4-206ENST00000600289 PDIA4P13667 645 aaKnown RBP18.03■□□□□ 0.48
LSM4-206ENST00000600289 IL17AQ16552 155 aa18.03■□□□□ 0.48
LSM4-206ENST00000600289 DTHD1Q6ZMT9 781 aa18.03■□□□□ 0.48
LSM4-206ENST00000600289 TMCO2Q7Z6W1 182 aaPredicted RBP18.03■□□□□ 0.48
LSM4-206ENST00000600289 RTN4RL1Q86UN2 441 aaPredicted RBP18.03■□□□□ 0.48
LSM4-206ENST00000600289 MTRQ99707 1265 aa18.03■□□□□ 0.48
LSM4-206ENST00000600289 RC3H2Q9HBD1 1191 aaKnown RBP18.03■□□□□ 0.48
LSM4-206ENST00000600289 C1orf112Q9NSG2 853 aa18.03■□□□□ 0.48
LSM4-206ENST00000600289 ASAP2O43150 1006 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 TAP1Q03518 808 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 RESTQ13127 1097 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 DSC3Q14574 896 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 NLRP7Q8WX94 980 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 PSPC1Q8WXF1 523 aaKnown RBP18.02■□□□□ 0.48
LSM4-206ENST00000600289 PPP1R16BQ96T49 567 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 GCOM2Q9BZD3 368 aaPredicted RBP18.02■□□□□ 0.48
LSM4-206ENST00000600289 INO80BQ9C086 356 aaPredicted RBP18.02■□□□□ 0.48
LSM4-206ENST00000600289 ATP6V0A4Q9HBG4 840 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 XPNPEP1Q9NQW7 623 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 RGS18Q9NS28 235 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 RNF216Q9NWF9 866 aaPredicted RBP18.02■□□□□ 0.48
LSM4-206ENST00000600289 MTMR6Q9Y217 621 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 COL4A3BPQ9Y5P4 624 aa18.02■□□□□ 0.48
LSM4-206ENST00000600289 LCHNA4D1U4 455 aa18.01■□□□□ 0.47
LSM4-206ENST00000600289 STX6O43752 255 aa18.01■□□□□ 0.47
LSM4-206ENST00000600289 NFX1Q12986 1120 aaKnown RBP18.01■□□□□ 0.47
LSM4-206ENST00000600289 POTEGQ6S5H5 508 aa18.01■□□□□ 0.47
LSM4-206ENST00000600289 FERMT3Q86UX7 667 aa18.01■□□□□ 0.47
LSM4-206ENST00000600289 RHPN2Q8IUC4 686 aa18.01■□□□□ 0.47
LSM4-206ENST00000600289 NPAS4Q8IUM7 802 aa18.01■□□□□ 0.47
LSM4-206ENST00000600289 KCTD17Q8N5Z5 321 aa18.01■□□□□ 0.47
LSM4-206ENST00000600289 PIGOQ8TEQ8 1089 aa18.01■□□□□ 0.47
LSM4-206ENST00000600289 HLA-CQ95604 372 aa18.01■□□□□ 0.47
LSM4-206ENST00000600289 CCDC43Q96MW1 224 aaKnown RBP18.01■□□□□ 0.47
LSM4-206ENST00000600289 A0A087WZ62 844 aa18■□□□□ 0.47
LSM4-206ENST00000600289 LINC01553A4QN01 128 aa18■□□□□ 0.47
LSM4-206ENST00000600289 SLC26A4O43511 780 aa18■□□□□ 0.47
LSM4-206ENST00000600289 MGEA5O60502 916 aa18■□□□□ 0.47
LSM4-206ENST00000600289 ARHGEF15O94989 841 aa18■□□□□ 0.47
LSM4-206ENST00000600289 ARL2P36404 184 aa18■□□□□ 0.47
LSM4-206ENST00000600289 CCT6AP40227 531 aaKnown RBP18■□□□□ 0.47
LSM4-206ENST00000600289 SARSP49591 514 aaKnown RBP18■□□□□ 0.47
LSM4-206ENST00000600289 POU5F1BQ06416 359 aa18■□□□□ 0.47
LSM4-206ENST00000600289 MXD4Q14582 209 aaPredicted RBP18■□□□□ 0.47
LSM4-206ENST00000600289 HYIQ5T013 277 aa18■□□□□ 0.47
LSM4-206ENST00000600289 KRT79Q5XKE5 535 aa18■□□□□ 0.47
LSM4-206ENST00000600289 SNX29Q8TEQ0 813 aa18■□□□□ 0.47
LSM4-206ENST00000600289 PRPF31Q8WWY3 499 aaKnown RBP18■□□□□ 0.47
LSM4-206ENST00000600289 ZNF689Q96CS4 500 aaPredicted RBP18■□□□□ 0.47
LSM4-206ENST00000600289 AK8Q96MA6 479 aa18■□□□□ 0.47
LSM4-206ENST00000600289 SCLT1Q96NL6 688 aa18■□□□□ 0.47
LSM4-206ENST00000600289 FDXACB1Q9BRP7 624 aaPredicted RBP18■□□□□ 0.47
LSM4-206ENST00000600289 ZSCAN16Q9H4T2 348 aaPredicted RBP18■□□□□ 0.47
LSM4-206ENST00000600289 IFT122Q9HBG6 1241 aa18■□□□□ 0.47
LSM4-206ENST00000600289 MORC2Q9Y6X9 1032 aaPredicted RBP18■□□□□ 0.47
LSM4-206ENST00000600289 MYH11P35749 1972 aa18■□□□□ 0.47
LSM4-206ENST00000600289 C9IYK1 514 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 GTPBP6O43824 516 aaPredicted RBP17.99■□□□□ 0.47
LSM4-206ENST00000600289 DGKIO75912 1065 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 STAG3L1P0CL83 205 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 SFPQP23246 707 aaKnown RBP eCLIP17.99■□□□□ 0.47
LSM4-206ENST00000600289 ERVK-21P61565 698 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 FAM189BP81408 668 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 LAMTOR4Q0VGL1 99 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 ECM1Q16610 540 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 FAM117BQ6P1L5 589 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 SLC24A5Q71RS6 500 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 SRGAP1Q7Z6B7 1085 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 IFNLR1Q8IU57 520 aaPredicted RBP17.99■□□□□ 0.47
LSM4-206ENST00000600289 KSR1Q8IVT5 923 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 MCPH1Q8NEM0 835 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 TMEM143Q96AN5 459 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 SAMD11Q96NU1 681 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 ADAM2Q99965 735 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 MMTAG2Q9BU76 263 aaKnown RBP17.99■□□□□ 0.47
LSM4-206ENST00000600289 TRAIPQ9BWF2 469 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 KCNH6Q9H252 994 aa17.99■□□□□ 0.47
LSM4-206ENST00000600289 ELAC1Q9H777 363 aaKnown RBP17.99■□□□□ 0.47
LSM4-206ENST00000600289 ADGRA3Q8IWK6 1321 aa17.98■□□□□ 0.47
LSM4-206ENST00000600289 ATG2AQ2TAZ0 1938 aa17.98■□□□□ 0.47
LSM4-206ENST00000600289 DENND3A2RUS2 1198 aa17.98■□□□□ 0.47
LSM4-206ENST00000600289 UPP2O95045 317 aa17.98■□□□□ 0.47
LSM4-206ENST00000600289 PCBP1Q15365 356 aaKnown RBP eCLIP17.98■□□□□ 0.47
LSM4-206ENST00000600289 NLRP4Q96MN2 994 aa17.98■□□□□ 0.47
LSM4-206ENST00000600289 YME1L1Q96TA2 773 aa17.98■□□□□ 0.47
LSM4-206ENST00000600289 NFKBIZQ9BYH8 718 aa17.98■□□□□ 0.47
LSM4-206ENST00000600289 CERS4Q9HA82 394 aa17.98■□□□□ 0.47
LSM4-206ENST00000600289 CHST12Q9NRB3 414 aa17.98■□□□□ 0.47
LSM4-206ENST00000600289 FOXD4L1Q9NU39 408 aa17.98■□□□□ 0.47
LSM4-206ENST00000600289 VWA3AA6NCI4 1184 aa17.97■□□□□ 0.47
LSM4-206ENST00000600289 PP2D1A8MPX8 630 aa17.97■□□□□ 0.47
LSM4-206ENST00000600289 TFDP1Q14186 410 aa17.97■□□□□ 0.47
LSM4-206ENST00000600289 PTPAQ15257 358 aa17.97■□□□□ 0.47
LSM4-206ENST00000600289 SF3A1Q15459 793 aaKnown RBP17.97■□□□□ 0.47
LSM4-206ENST00000600289 ZNF668Q96K58 619 aaPredicted RBP17.97■□□□□ 0.47
LSM4-206ENST00000600289 TGS1Q96RS0 853 aaKnown RBP17.97■□□□□ 0.47
LSM4-206ENST00000600289 PHOX2BQ99453 314 aa17.97■□□□□ 0.47
LSM4-206ENST00000600289 BMP2KQ9NSY1 1161 aaPredicted RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms