RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TMEM161AQ9NX61 479 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 MYO18BQ8IUG5 2567 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 COL1A2P08123 1366 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 MEIS3P2A8K0S8 358 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 C2CD4DB7Z1M9 353 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 DTNBO60941 627 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 BRD1O95696 1058 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 RPLP2P05387 115 aaKnown RBP9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 ATF7P17544 494 aaPredicted RBP9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 LAG3P18627 525 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 SLC26A2P50443 739 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 UBE3AQ05086 875 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 AP3B2Q13367 1082 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 ECHDC2Q86YB7 292 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 KREMEN2Q8NCW0 462 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 BCL7CQ8WUZ0 217 aaPredicted RBP9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 TNPO1Q92973 898 aaKnown RBP9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 LPPQ93052 612 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 TMEM117Q9H0C3 514 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 ADAMTS10Q9H324 1103 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 SAMM50Q9Y512 469 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 MAFBQ9Y5Q3 323 aaPredicted RBP9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 HCFC2Q9Y5Z7 792 aa9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 CNOT1A5YKK6 2376 aaKnown RBP9.79□□□□□ -0.84
SHKBP1-220ENST00000599716 NBEAQ8NFP9 2946 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 B4GALT3O60512 393 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 MYBP10242 640 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 PLCB3Q01970 1234 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 PRKCEQ02156 737 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 PFKFB3Q16875 520 aaPredicted RBP9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 RARS2Q5T160 578 aaKnown RBP9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 DHX32Q7L7V1 743 aaKnown RBP9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 NIPA1Q7RTP0 329 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 ABI1Q8IZP0 508 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 LINC01465Q8N7H1 131 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 BBXQ8WY36 941 aaPredicted RBP9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 LENG9Q96B70 501 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 RIPOR3Q96MK2 946 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 ZNF558Q96NG5 402 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 SCLT1Q96NL6 688 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 SEMA4AQ9H3S1 761 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 TCEAL9Q9UHQ7 104 aa9.78□□□□□ -0.84
SHKBP1-220ENST00000599716 USP9XQ93008 2570 aaPredicted RBP9.77□□□□□ -0.84
SHKBP1-220ENST00000599716 C2orf71A6NGG8 1288 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 MSH4O15457 936 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 CLASP2O75122 1294 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 LMNAP02545 664 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 OATP04181 439 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 PSAPP07602 524 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 CYP3A4P08684 503 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 EPCAMP16422 314 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 ZSCAN20P17040 1043 aaPredicted RBP9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 EIF4BP23588 611 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 GPC3P51654 580 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 BCAR1P56945 870 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 KIAA0319Q5VV43 1072 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 ZNF746Q6NUN9 644 aaPredicted RBP9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 TMEM184AQ6ZMB5 413 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 Q6ZUG5 572 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 KSR1Q8IVT5 923 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 REXO1Q8N1G1 1221 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 SLC39A11Q8N1S5 342 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 LRRC43Q8N309 656 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 TMEM105Q8N8V8 129 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 NLRP7Q8WX94 980 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 BRF1Q92994 677 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 MAP7D2Q96T17 732 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 CDCA3Q99618 268 aaPredicted RBP9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 GBP3Q9H0R5 595 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 UNC45AQ9H3U1 944 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 ELAC1Q9H777 363 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 NCOA5Q9HCD5 579 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 SPG21Q9NZD8 308 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 VPS54Q9P1Q0 977 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 PUF60Q9UHX1 559 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 INPP5FQ9Y2H2 1132 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 PCDHA10Q9Y5I2 948 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 LOC400499M0QZD8 3231 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 ITPR1Q14643 2758 aa9.77□□□□□ -0.85
SHKBP1-220ENST00000599716 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 ZC3H11AO75152 810 aaKnown RBP eCLIP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 CXCL14O95715 111 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 SSBP05455 408 aaKnown RBP eCLIP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 DARSP14868 501 aaKnown RBP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 SDHBP21912 280 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 AFF1P51825 1210 aaKnown RBP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 CCT2P78371 535 aaKnown RBP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 FGD1P98174 961 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 KRT17Q04695 432 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 MTERF2Q49AM1 385 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 ZNF598Q86UK7 904 aaKnown RBP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 MRPL43Q8N983 215 aaKnown RBP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 KCNG4Q8TDN1 519 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 CHAMP1Q96JM3 812 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 LARP6Q9BRS8 491 aaKnown RBP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 VN1R3Q9BXE9 311 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 ZMYND12Q9H0C1 365 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 DISC1Q9NRI5 854 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 BMP2KQ9NSY1 1161 aaPredicted RBP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 TBC1D22BQ9NU19 505 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms