RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 LEO1Q8WVC0 666 aaPredicted RBP15.78■□□□□ 0.12
SHKBP1-217ENST00000598558 CCDC43Q96MW1 224 aaKnown RBP15.78■□□□□ 0.12
SHKBP1-217ENST00000598558 GCOM2Q9BZD3 368 aaPredicted RBP15.78■□□□□ 0.12
SHKBP1-217ENST00000598558 TSHZ2Q9NRE2 1034 aa15.78■□□□□ 0.12
SHKBP1-217ENST00000598558 EVPLQ92817 2033 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 SFI1A8K8P3 1242 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 ASAP2O43150 1006 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 SLC26A4O43511 780 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 SSBP05455 408 aaKnown RBP eCLIP15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 KCNJ6P48051 423 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 PTENP60484 403 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 RAD51AP2Q09MP3 1159 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 DHX8Q14562 1220 aaKnown RBP15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 SPRED2Q7Z698 418 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 MCPH1Q8NEM0 835 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 PHOSPHO2Q8TCD6 241 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 RAD54LQ92698 747 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 TOP1MTQ969P6 601 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 CALML4Q96GE6 196 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 CDK5RAP3Q96JB5 506 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 SCLT1Q96NL6 688 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 ADAM2Q99965 735 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 NT5C3AQ9H0P0 336 aa15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 TSPYL2Q9H2G4 693 aaPredicted RBP15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 MTIF3Q9H2K0 278 aaKnown RBP15.77■□□□□ 0.12
SHKBP1-217ENST00000598558 LCHNA4D1U4 455 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 GPR182O15218 404 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 CUTAO60888 179 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 HIP1RO75146 1068 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 HOXA11P31270 313 aaPredicted RBP15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 CDC42EP1Q00587 391 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 CACNB1Q02641 598 aaPredicted RBP15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 MXD4Q14582 209 aaPredicted RBP15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 AMHR2Q16671 573 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 IFNLR1Q8IU57 520 aaPredicted RBP15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 MYOCDQ8IZQ8 938 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 ZNF710Q8N1W2 664 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 SLC9A7Q96T83 725 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 NKX2-4Q9H2Z4 354 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 GDPD2Q9HCC8 539 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 RGS18Q9NS28 235 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 CFAP45Q9UL16 551 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 USP20Q9Y2K6 914 aa15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 RBM19Q9Y4C8 960 aaKnown RBP15.76■□□□□ 0.11
SHKBP1-217ENST00000598558 ADGRA3Q8IWK6 1321 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 TTLL13PA6NNM8 815 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 C9IYK1 514 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 EFCAB14O75071 495 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 UPP2O95045 317 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 GJB5O95377 273 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 EDN1P05305 212 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 DNAJB2P25686 324 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 NUCB2P80303 420 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 FAM189BP81408 668 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 MBTD1Q05BQ5 628 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 POU5F1BQ06416 359 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 Q7L0L9 218 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 KCTD17Q8N5Z5 321 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 PDILTQ8N807 584 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 KCNG4Q8TDN1 519 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 KIFC3Q9BVG8 833 aa15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 TTYH1Q9H313 450 aaPredicted RBP15.75■□□□□ 0.11
SHKBP1-217ENST00000598558 ARID2Q68CP9 1835 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 AMHP03971 560 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 NCLP19338 710 aaKnown RBP15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 GUCY2CP25092 1073 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 ME1P48163 572 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 GATMP50440 423 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 KRT85P78386 507 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 E2F4Q16254 413 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 RRAGBQ5VZM2 374 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 CATSPER4Q7RTX7 472 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 SRGAP1Q7Z6B7 1085 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 GPBP1Q86WP2 473 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 LARP4BQ92615 738 aaKnown RBP15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 FTHL17Q9BXU8 183 aa15.74■□□□□ 0.11
SHKBP1-217ENST00000598558 LRRIQ4A6NIV6 560 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 B4GALT5O43286 388 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 IBSPP21815 317 aaPredicted RBP15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 ANP32AP39687 249 aaKnown RBP15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 PHKA2P46019 1235 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 HTRA4P83105 476 aaPredicted RBP15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 GIT2Q14161 759 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 UBXN11Q5T124 520 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 RESP18Q5W5W9 173 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 CDCA2Q69YH5 1023 aaPredicted RBP15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 RASSF8Q8NHQ8 419 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 CPB2Q96IY4 423 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 SPATA32Q96LK8 384 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 NFKBIZQ9BYH8 718 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 INO80BQ9C086 356 aaPredicted RBP15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 RNF19AQ9NV58 838 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 CCDC39Q9UFE4 941 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 PCDHA11Q9Y5I1 949 aa15.73■□□□□ 0.11
SHKBP1-217ENST00000598558 LAMA2P24043 3122 aaKnown RBP15.72■□□□□ 0.11
SHKBP1-217ENST00000598558 DENND3A2RUS2 1198 aa15.72■□□□□ 0.11
SHKBP1-217ENST00000598558 MYMKA6NI61 221 aa15.72■□□□□ 0.11
SHKBP1-217ENST00000598558 INO80B-WBP1J3KQ70 363 aa15.72■□□□□ 0.11
SHKBP1-217ENST00000598558 TLL1O43897 1013 aa15.72■□□□□ 0.11
SHKBP1-217ENST00000598558 TSPAN1O60635 241 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms