RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MAGEC2Q9UBF1 373 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-209ENST00000597423 DOCK5Q9H7D0 1870 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 C17orf102A2RUQ5 167 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 MOXD2PA6NHM9 499 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 PDXKO00764 312 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 SLC16A4O15374 487 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 PRPF6O94906 941 aaKnown RBP16.78■□□□□ 0.28
TRIM28-209ENST00000597423 C22orf31O95567 290 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 RPLP2P05387 115 aaKnown RBP16.78■□□□□ 0.28
TRIM28-209ENST00000597423 MYBP10242 640 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 HSPA8P11142 646 aaKnown RBP16.78■□□□□ 0.28
TRIM28-209ENST00000597423 NCKAP1LP55160 1127 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 GTF2BQ00403 316 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 SPAG1Q07617 926 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 STRN3Q13033 797 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 ANKRD40Q6AI12 368 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 NFRKBQ6P4R8 1299 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 NELFCDQ8IXH7 590 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 CSGALNACT2Q8N6G5 542 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 SH3TC2Q8TF17 1288 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 VTI1AQ96AJ9 217 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 SEZ6LQ9BYH1 1024 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.78■□□□□ 0.288e-10■□□□□ 9
TRIM28-209ENST00000597423 THAP9Q9H5L6 903 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 SETD4Q9NVD3 440 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 FANCLQ9NW38 375 aa16.78■□□□□ 0.28
TRIM28-209ENST00000597423 MYH9P35579 1960 aaKnown RBP16.78■□□□□ 0.28
TRIM28-209ENST00000597423 ASGR1P07306 291 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 GLRA2P23416 452 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 FKBP3Q00688 224 aaKnown RBP16.77■□□□□ 0.28
TRIM28-209ENST00000597423 PLCB2Q00722 1185 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 POU5F1BQ06416 359 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 LAMTOR4Q0VGL1 99 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 HSP90AA2PQ14568 343 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-209ENST00000597423 NCAPHQ15003 741 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 EDRF1Q3B7T1 1238 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 TTI2Q6NXR4 508 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 FBXO46Q6PJ61 603 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-209ENST00000597423 CXCL17Q6UXB2 119 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 ZBTB8OSQ8IWT0 167 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 NME8Q8N427 588 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 TRAPPC12Q8WVT3 735 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 KCNN1Q92952 543 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 FIZ1Q96SL8 496 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 STRA6Q9BX79 667 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 GBP3Q9H0R5 595 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 SEMA6BQ9H3T3 888 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 TMEM134Q9H6X4 195 aa16.77■□□□□ 0.28
TRIM28-209ENST00000597423 TYW1Q9NV66 732 aaKnown RBP16.77■□□□□ 0.28
TRIM28-209ENST00000597423 ZSWIM8A7E2V4 1837 aa16.77■□□□□ 0.27
TRIM28-209ENST00000597423 DENND3A2RUS2 1198 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 MYADML2A6NDP7 307 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 LRRIQ4A6NIV6 560 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 K7ERI5 159 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 CETN3O15182 167 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 GNA14O95837 355 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 TPM2P07951 284 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 SRGAP2CP0DJJ0 459 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 CASP5P51878 434 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 SOX10P56693 466 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 MYBPC2Q14324 1141 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 ZC2HC1CQ53FD0 456 aaPredicted RBP16.76■□□□□ 0.27
TRIM28-209ENST00000597423 LHX8Q68G74 356 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 RHPN2Q8IUC4 686 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 LRRC71Q8N4P6 559 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 TMEM161BQ8NDZ6 487 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 ASAP3Q8TDY4 903 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 GLT1D1Q96MS3 346 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 CEP63Q96MT8 703 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 CTAGE1Q96RT6 745 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 SRRTQ9BXP5 876 aaKnown RBP16.76■□□□□ 0.27
TRIM28-209ENST00000597423 KCTD10Q9H3F6 313 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 TBX20Q9UMR3 447 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 TRAF3IP3Q9Y228 551 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 AKT3Q9Y243 479 aa16.76■□□□□ 0.27
TRIM28-209ENST00000597423 SMIM35A0A1B0GVV1 85 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 MBLAC1A4D2B0 266 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-209ENST00000597423 KBTBD13C9JR72 458 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 PPP1R37O75864 691 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 SERPINC1P01008 464 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 TPM3P06753 285 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 ACLYP53396 1101 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 IRX5P78411 483 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-209ENST00000597423 PTPN11Q06124 597 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-209ENST00000597423 NBPF20Q3BBV1 942 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 MARCH8Q5T0T0 291 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 CCSAPQ6IQ19 270 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-209ENST00000597423 GLIS3Q8NEA6 775 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 LMBR1Q8WVP7 490 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 BSNDQ8WZ55 320 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 FGFBP2Q9BYJ0 223 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 RNF208Q9H0X6 261 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 ARHGAP28Q9P2N2 729 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 HDAC6Q9UBN7 1215 aa16.75■□□□□ 0.27
TRIM28-209ENST00000597423 CBFA2T2O43439 604 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 HSPA1AP0DMV8 641 aaKnown RBP16.74■□□□□ 0.27
TRIM28-209ENST00000597423 HSPA1BP0DMV9 641 aaKnown RBP16.74■□□□□ 0.27
TRIM28-209ENST00000597423 CYP2C9P11712 490 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 CCL5P13501 91 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 CAPN2P17655 700 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms