RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 CCDC83Q8IWF9 413 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 BCL7CQ8WUZ0 217 aaPredicted RBP11.76□□□□□ -0.53
LIG1-213ENST00000596672 LPPQ93052 612 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 MSLNLQ96KJ4 702 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 MAP7D2Q96T17 732 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 LXNQ9BS40 222 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 IGFLR1Q9H665 355 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 ELAC1Q9H777 363 aaKnown RBP11.76□□□□□ -0.53
LIG1-213ENST00000596672 CLDND1Q9NY35 253 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 LRFN2Q9ULH4 789 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 PIEZO1Q92508 2521 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 WDFY4Q6ZS81 3184 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 A0A0U1RQF3 1178 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 PER2O15055 1255 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 TBX3O15119 743 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 FGF18O76093 207 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 CD2BP2O95400 341 aaKnown RBP11.75□□□□□ -0.53
LIG1-213ENST00000596672 P4HBP07237 508 aaKnown RBP11.75□□□□□ -0.53
LIG1-213ENST00000596672 SPATA31C1P0DKV0 1188 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 GCFC2P16383 781 aaKnown RBP11.75□□□□□ -0.53
LIG1-213ENST00000596672 KCNC3Q14003 757 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 NCAPH2Q6IBW4 605 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 RBM23Q86U06 439 aaKnown RBP11.75□□□□□ -0.53
LIG1-213ENST00000596672 RHPN2Q8IUC4 686 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 C4orf19Q8IY42 314 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 HELQQ8TDG4 1101 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 PRPF31Q8WWY3 499 aaKnown RBP11.75□□□□□ -0.53
LIG1-213ENST00000596672 NLRP7Q8WX94 980 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 EIF2AK1Q9BQI3 630 aaKnown RBP11.75□□□□□ -0.53
LIG1-213ENST00000596672 TMEM117Q9H0C3 514 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 ATP6V0A4Q9HBG4 840 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 TCEAL9Q9UHQ7 104 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 RWDD3Q9Y3V2 267 aa11.75□□□□□ -0.53
LIG1-213ENST00000596672 C19orf67A6NJJ6 358 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 HIDE1A8MVS5 230 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 NT5C1B-RDH14C9J2C7 533 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 MBTPS2O43462 519 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 TMOD1P28289 359 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 PHKA2P46019 1235 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 NRIP1P48552 1158 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 ZP2Q05996 745 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 NBR1Q14596 966 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 NAALADL2Q58DX5 795 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 EP400NLQ6ZTU2 488 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 C4orf32Q8N8J7 132 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 RNF169Q8NCN4 708 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 ASAP3Q8TDY4 903 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 VN1R3Q9BXE9 311 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 CDH22Q9UJ99 828 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 CACNA1HO95180 2353 aa11.74□□□□□ -0.53
LIG1-213ENST00000596672 FAM86C2PA6NEL3 165 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 POTEMA6NI47 508 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 YWHABP31946 246 aaKnown RBP11.73□□□□□ -0.53
LIG1-213ENST00000596672 LAMTOR4Q0VGL1 99 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 ECM1Q16610 540 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 AMHR2Q16671 573 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 KCNT2Q6UVM3 1135 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 AGMOQ6ZNB7 445 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 TPH2Q8IWU9 490 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 EFHBQ8N7U6 833 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 CEP170P1Q96L14 293 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 NLRP4Q96MN2 994 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 TRAIPQ9BWF2 469 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 GCOM2Q9BZD3 368 aaPredicted RBP11.73□□□□□ -0.53
LIG1-213ENST00000596672 RNF39Q9H2S5 420 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 TSHZ2Q9NRE2 1034 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 BARX2Q9UMQ3 279 aaPredicted RBP11.73□□□□□ -0.53
LIG1-213ENST00000596672 LIMCH1Q9UPQ0 1083 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 COL4A3BPQ9Y5P4 624 aa11.73□□□□□ -0.53
LIG1-213ENST00000596672 DOCK6Q96HP0 2047 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 TTLL13PA6NNM8 815 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 PI4K2BG5E9Z4 385 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 MED24O75448 989 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 OFD1O75665 1012 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 LYPLA2O95372 231 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 SRGAP2CP0DJJ0 459 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 ATP2B1P20020 1258 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 COL9A1P20849 921 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 TXKP42681 527 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 TOB1P50616 345 aaPredicted RBP11.72□□□□□ -0.53
LIG1-213ENST00000596672 PLCB3Q01970 1234 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 EMC2Q15006 297 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 CALCRLQ16602 461 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 XKR9Q5GH70 373 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 FERMT3Q86UX7 667 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 ZNF410Q86VK4 478 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 ZNF280BQ86YH2 543 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 GJD3Q8N144 294 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 SLC39A11Q8N1S5 342 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 IL27Q8NEV9 243 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 PIGOQ8TEQ8 1089 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 WASF1Q92558 559 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 LRFN3Q9BTN0 628 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 TTC12Q9H892 705 aaPredicted RBP11.72□□□□□ -0.53
LIG1-213ENST00000596672 DNAJB4Q9UDY4 337 aa11.72□□□□□ -0.53
LIG1-213ENST00000596672 TRIP11Q15643 1979 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 ZNF623O75123 536 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 DDHD2O94830 711 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 EYA4O95677 639 aa11.71□□□□□ -0.53
LIG1-213ENST00000596672 EOMESO95936 686 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms