RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 CXCL14O95715 111 aa15.3■□□□□ 0.04
SS18-222ENST00000582792 HMGB1P09429 215 aaKnown RBP15.3■□□□□ 0.04
SS18-222ENST00000582792 FGFR4P22455 802 aa15.3■□□□□ 0.04
SS18-222ENST00000582792 BCAR1P56945 870 aa15.3■□□□□ 0.04
SS18-222ENST00000582792 BMS1Q14692 1282 aaKnown RBP15.3■□□□□ 0.04
SS18-222ENST00000582792 UGCGQ16739 394 aa15.3■□□□□ 0.04
SS18-222ENST00000582792 NLRP7Q8WX94 980 aa15.3■□□□□ 0.04
SS18-222ENST00000582792 RSPH1Q8WYR4 309 aa15.3■□□□□ 0.04
SS18-222ENST00000582792 TMEM169Q96HH4 297 aa15.3■□□□□ 0.04
SS18-222ENST00000582792 MYO10Q9HD67 2058 aa15.3■□□□□ 0.04
SS18-222ENST00000582792 NAP1L2Q9ULW6 460 aaPredicted RBP15.3■□□□□ 0.04
SS18-222ENST00000582792 SPTBN4Q9H254 2564 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 PROB1E7EW31 1015 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 MSH4O15457 936 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 PRPF3O43395 683 aaKnown RBP15.29■□□□□ 0.04
SS18-222ENST00000582792 SFNP31947 248 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 CA8P35219 290 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 TBC1D8BQ0IIM8 1120 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 TARBP2Q15633 366 aaKnown RBP15.29■□□□□ 0.04
SS18-222ENST00000582792 RARS2Q5T160 578 aaKnown RBP15.29■□□□□ 0.04
SS18-222ENST00000582792 KIAA1841Q6NSI8 718 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 ZDHHC14Q8IZN3 488 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 VPS52Q8N1B4 723 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 BICD2Q8TD16 824 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 RIT2Q99578 217 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 TRAIPQ9BWF2 469 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 ZBP1Q9H171 429 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 CHST12Q9NRB3 414 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 DZANK1Q9NVP4 752 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 IRAK3Q9Y616 596 aa15.29■□□□□ 0.04
SS18-222ENST00000582792 NID2Q14112 1375 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.28■□□□□ 0.04
SS18-222ENST00000582792 CARNS1A5YM72 827 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 EDIL3O43854 480 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 ZC3H11AO75152 810 aaKnown RBP eCLIP15.28■□□□□ 0.04
SS18-222ENST00000582792 CSDE1O75534 798 aaKnown RBP15.28■□□□□ 0.04
SS18-222ENST00000582792 WEE2P0C1S8 567 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 PHKA2P46019 1235 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 JAK3P52333 1124 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 POLGP54098 1239 aaPredicted RBP15.28■□□□□ 0.04
SS18-222ENST00000582792 FGD1P98174 961 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 CDC42EP1Q00587 391 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 GIT2Q14161 759 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 TMEM173Q86WV6 379 aaPredicted RBP15.28■□□□□ 0.04
SS18-222ENST00000582792 C12orf76Q8N812 135 aaPredicted RBP15.28■□□□□ 0.04
SS18-222ENST00000582792 TMEM105Q8N8V8 129 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 TDRD5Q8NAT2 981 aaKnown RBP15.28■□□□□ 0.04
SS18-222ENST00000582792 SLC5A5Q92911 643 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 GCOM2Q9BZD3 368 aaPredicted RBP15.28■□□□□ 0.04
SS18-222ENST00000582792 SMOC2Q9H3U7 446 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 DMDP11532 3685 aa15.28■□□□□ 0.04
SS18-222ENST00000582792 CHMP2AO43633 222 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 GAS7O60861 476 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 ASGR2P07307 311 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 CTSAP10619 480 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 DRP2Q13474 957 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 ATAT1Q5SQI0 421 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 LRCH2Q5VUJ6 765 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 DDX53Q86TM3 631 aaKnown RBP15.27■□□□□ 0.04
SS18-222ENST00000582792 PLCD3Q8N3E9 789 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 TMEM87AQ8NBN3 555 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 SLC22A17Q8WUG5 538 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 AUTS2Q8WXX7 1259 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 PHKBQ93100 1093 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 IGSF21Q96ID5 467 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 TEKT3Q9BXF9 490 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 NIFKQ9BYG3 293 aaKnown RBP15.27■□□□□ 0.04
SS18-222ENST00000582792 UNC45AQ9H3U1 944 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 DBR1Q9UK59 544 aaKnown RBP15.27■□□□□ 0.04
SS18-222ENST00000582792 USTQ9Y2C2 406 aa15.27■□□□□ 0.04
SS18-222ENST00000582792 A0A087WZ62 844 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 IGKV6-21A0A0C4DH24 114 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 REC8O95072 547 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 SKIP12755 728 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 CPA1P15085 419 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 EPCAMP16422 314 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 SFPQP23246 707 aaKnown RBP eCLIP15.26■□□□□ 0.03
SS18-222ENST00000582792 NBL1P41271 181 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 USP11P51784 963 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 MTERF2Q49AM1 385 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 ASTLQ6HA08 431 aaPredicted RBP15.26■□□□□ 0.03
SS18-222ENST00000582792 KANK3Q6NY19 840 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 Q6ZUG5 572 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 ASCL5Q7RTU5 278 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 CCDC148Q8NFR7 591 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 RDM1Q8NG50 284 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 BCL7CQ8WUZ0 217 aaPredicted RBP15.26■□□□□ 0.03
SS18-222ENST00000582792 BRF1Q92994 677 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 LPPQ93052 612 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 CEP89Q96ST8 783 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 FDXACB1Q9BRP7 624 aaPredicted RBP15.26■□□□□ 0.03
SS18-222ENST00000582792 NRDE2Q9H7Z3 1164 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 LIMD1Q9UGP4 676 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 SEPT9Q9UHD8 586 aaPredicted RBP15.26■□□□□ 0.03
SS18-222ENST00000582792 DENND4AQ7Z401 1863 aa15.26■□□□□ 0.03
SS18-222ENST00000582792 PSMD10O75832 226 aa15.25■□□□□ 0.03
SS18-222ENST00000582792 STBD1O95210 358 aa15.25■□□□□ 0.03
SS18-222ENST00000582792 GALTP07902 379 aa15.25■□□□□ 0.03
SS18-222ENST00000582792 DNM2P50570 870 aa15.25■□□□□ 0.03
SS18-222ENST00000582792 CLCN5P51795 746 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms