RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 DMP1Q13316 513 aaPredicted RBP11.55□□□□□ -0.56
SS18-217ENST00000580958 ACVR2BQ13705 512 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 LAMC2Q13753 1193 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 PLCB4Q15147 1175 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 SYCP1Q15431 976 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 TARBP2Q15633 366 aaKnown RBP11.55□□□□□ -0.56
SS18-217ENST00000580958 FKBP15Q5T1M5 1219 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 HS2ST1Q7LGA3 356 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 PLPPR4Q7Z2D5 763 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 TRIM59Q8IWR1 403 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 MSL3Q8N5Y2 521 aaKnown RBP11.55□□□□□ -0.56
SS18-217ENST00000580958 SLC17A8Q8NDX2 589 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 SPIRE2Q8WWL2 714 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 KIFC3Q9BVG8 833 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 GBP3Q9H0R5 595 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 NDST4Q9H3R1 872 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 ST6GALNAC4Q9H4F1 302 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 DHX33Q9H6R0 707 aaKnown RBP11.55□□□□□ -0.56
SS18-217ENST00000580958 KMT5AQ9NQR1 393 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 AGPAT3Q9NRZ7 376 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 TRIP12Q14669 1992 aaPredicted RBP11.55□□□□□ -0.56
SS18-217ENST00000580958 CASP8AP2Q9UKL3 1982 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 SLC16A3O15427 465 aaKnown RBP11.54□□□□□ -0.56
SS18-217ENST00000580958 CA12O43570 354 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 NRDCO43847 1150 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 MFAP3LO75121 409 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 TOMM70O94826 608 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 GYPCP04921 128 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 TPM1P09493 284 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 EPB41P11171 864 aaKnown RBP11.54□□□□□ -0.56
SS18-217ENST00000580958 CYP2B6P20813 491 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 CASP14P31944 242 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 KLK7P49862 253 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 CYP2J2P51589 502 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 SMTNP53814 917 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 RTP1P59025 263 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 TRIM14Q14142 442 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 PRAMEF19Q5SWL8 479 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 FRMD5Q7Z6J6 570 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 TMEM161BQ8NDZ6 487 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 CCDC112Q8NEF3 446 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 OR6J1Q8NGC5 347 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 GOLGA5Q8TBA6 731 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 ASAP3Q8TDY4 903 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 ATP8B4Q8TF62 1192 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 AFG1LQ8WV93 481 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 BBXQ8WY36 941 aaPredicted RBP11.54□□□□□ -0.56
SS18-217ENST00000580958 USP6NLQ92738 828 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 EMID1Q96A84 441 aaPredicted RBP11.54□□□□□ -0.56
SS18-217ENST00000580958 TMEM143Q96AN5 459 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 IFT74Q96LB3 600 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 PCMTD1Q96MG8 357 aaPredicted RBP11.54□□□□□ -0.56
SS18-217ENST00000580958 ERGIC2Q96RQ1 377 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 TMEM121BQ9BXQ6 578 aaPredicted RBP11.54□□□□□ -0.56
SS18-217ENST00000580958 ABHD16BQ9H3Z7 469 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 SMARCAD1Q9H4L7 1026 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 TMEM206Q9H813 350 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 C17orf75Q9HAS0 396 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 DMAC2Q9NW81 257 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 FLRT1Q9NZU1 646 aa11.54□□□□□ -0.56
SS18-217ENST00000580958 DENND3A2RUS2 1198 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 RASSF10A6NK89 507 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 TISP43B9A030 160 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 RNF225M0QZC1 329 aaPredicted RBP11.53□□□□□ -0.56
SS18-217ENST00000580958 TNPO2O14787 897 aaKnown RBP11.53□□□□□ -0.56
SS18-217ENST00000580958 AOC2O75106 756 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 MAFO75444 373 aaPredicted RBP11.53□□□□□ -0.56
SS18-217ENST00000580958 AKAP3O75969 853 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 LGALS2P05162 132 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 HOXC6P09630 235 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 SMPD1P17405 629 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 GLRA2P23416 452 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 CTGFP29279 349 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 ARL2P36404 184 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 RGS2P41220 211 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 FXR1P51114 621 aaKnown RBP eCLIP11.53□□□□□ -0.56
SS18-217ENST00000580958 CCL14Q16627 93 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 DUSP28Q4G0W2 176 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 IQSEC1Q6DN90 963 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 TMEM139Q8IV31 216 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 FAM186BQ8IYM0 893 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 SLC7A3Q8WY07 619 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 HVCN1Q96D96 273 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 TMX1Q9H3N1 280 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 ARMCX3Q9UH62 379 aaPredicted RBP11.53□□□□□ -0.56
SS18-217ENST00000580958 GJD2Q9UKL4 321 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 TBX20Q9UMR3 447 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 EXOC7Q9UPT5 735 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 SIK3Q9Y2K2 1263 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 PPME1Q9Y570 386 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.53□□□□□ -0.56
SS18-217ENST00000580958 ADGRA3Q8IWK6 1321 aa11.53□□□□□ -0.56
SS18-217ENST00000580958 ZBTB42B2RXF5 422 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 ADCY6O43306 1168 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 HBP1O60381 514 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 CLCN1P35523 988 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 PSMC2P35998 433 aaKnown RBP11.52□□□□□ -0.57
SS18-217ENST00000580958 SLC26A2P50443 739 aa11.52□□□□□ -0.57
SS18-217ENST00000580958 NOLC1Q14978 699 aaKnown RBP eCLIP11.52□□□□□ -0.57
SS18-217ENST00000580958 CNGA4Q8IV77 575 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms