RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 PANK2Q9BZ23 570 aa17.18■□□□□ 0.34
SS18-216ENST00000580751 ADAMTS10Q9H324 1103 aa17.18■□□□□ 0.34
SS18-216ENST00000580751 TMEM63CQ9P1W3 806 aa17.18■□□□□ 0.34
SS18-216ENST00000580751 SIP14410 1827 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 NBNO60934 754 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 GHRP10912 638 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 PPP2R5AQ15172 486 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 PSRC1Q6PGN9 363 aaPredicted RBP17.17■□□□□ 0.34
SS18-216ENST00000580751 KRBA2Q6ZNG9 492 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 TSHZ1Q6ZSZ6 1077 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 DEFB128Q7Z7B8 93 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 CEP57L1Q8IYX8 460 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 CNNM3Q8NE01 707 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 NLRP4Q96MN2 994 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 OSMRQ99650 979 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 GDF15Q99988 308 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 GCOM2Q9BZD3 368 aaPredicted RBP17.17■□□□□ 0.34
SS18-216ENST00000580751 LRRC27Q9C0I9 530 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 TNMDQ9H2S6 317 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 GPRC5CQ9NQ84 441 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 PCDH10Q9P2E7 1040 aa17.17■□□□□ 0.34
SS18-216ENST00000580751 SCN5AQ14524 2016 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 RANBP2P49792 3224 aaKnown RBP17.16■□□□□ 0.34
SS18-216ENST00000580751 HIP1RO75146 1068 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 KRT18P05783 430 aaKnown RBP17.16■□□□□ 0.34
SS18-216ENST00000580751 GLRA2P23416 452 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 EIF4BP23588 611 aaKnown RBP17.16■□□□□ 0.34
SS18-216ENST00000580751 PHKA2P46019 1235 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 LPIN1Q14693 890 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 ODR4Q5SWX8 454 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 PRPF38BQ5VTL8 546 aaKnown RBP17.16■□□□□ 0.34
SS18-216ENST00000580751 FAM43BQ6ZT52 329 aaPredicted RBP17.16■□□□□ 0.34
SS18-216ENST00000580751 RNF149Q8NC42 400 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 ASAP3Q8TDY4 903 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 IFT74Q96LB3 600 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 INO80BQ9C086 356 aaPredicted RBP17.16■□□□□ 0.34
SS18-216ENST00000580751 C17orf75Q9HAS0 396 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 ODF2LQ9ULJ1 636 aa17.16■□□□□ 0.34
SS18-216ENST00000580751 A0A087WZ62 844 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 ACTN4O43707 911 aaKnown RBP17.15■□□□□ 0.34
SS18-216ENST00000580751 TBCAO75347 108 aaKnown RBP17.15■□□□□ 0.34
SS18-216ENST00000580751 RPS6KA5O75582 802 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 SRGAP2CP0DJJ0 459 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 ACTN1P12814 892 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 DARSP14868 501 aaKnown RBP17.15■□□□□ 0.34
SS18-216ENST00000580751 ZNF445P59923 1031 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 AMPD3Q01432 767 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 POU5F1BQ06416 359 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 PAK2Q13177 524 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 CAPSQ13938 189 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 GPNMBQ14956 572 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 ZSCAN23Q3MJ62 389 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 LONRF3Q496Y0 759 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 PLEKHG4Q58EX7 1191 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 CNKSR3Q6P9H4 555 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 KSR1Q8IVT5 923 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 TMEM40Q8WWA1 233 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 SEPT8Q92599 483 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 APBB2Q92870 758 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 FDXACB1Q9BRP7 624 aaPredicted RBP17.15■□□□□ 0.34
SS18-216ENST00000580751 IFIH1Q9BYX4 1025 aaKnown RBP17.15■□□□□ 0.34
SS18-216ENST00000580751 UBE2OQ9C0C9 1292 aaKnown RBP17.15■□□□□ 0.34
SS18-216ENST00000580751 KCNG1Q9UIX4 513 aa17.15■□□□□ 0.34
SS18-216ENST00000580751 GPR182O15218 404 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 ACRP10323 421 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 SFPQP23246 707 aaKnown RBP eCLIP17.14■□□□□ 0.33
SS18-216ENST00000580751 BMP8BP34820 402 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 NAMPTP43490 491 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 RAD51AP2Q09MP3 1159 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 MAPK7Q13164 816 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 DMP1Q13316 513 aaPredicted RBP17.14■□□□□ 0.33
SS18-216ENST00000580751 TPRNQ4KMQ1 711 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 ARSHQ5FYA8 562 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 SRGAP1Q7Z6B7 1085 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 DAW1Q8N136 415 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 ZNF668Q96K58 619 aaPredicted RBP17.14■□□□□ 0.33
SS18-216ENST00000580751 REEP2Q9BRK0 252 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 NFKBIZQ9BYH8 718 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 C2orf40Q9H1Z8 148 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 CDHR5Q9HBB8 845 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 IFT122Q9HBG6 1241 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 KBTBD4Q9NVX7 518 aa17.14■□□□□ 0.33
SS18-216ENST00000580751 LRRIQ4A6NIV6 560 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 EFCAB14O75071 495 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 BAIAP3O94812 1187 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 FGBP02675 491 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 CD52P31358 61 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 EPHB4P54760 987 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 PTENP60484 403 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 PCBP1Q15365 356 aaKnown RBP eCLIP17.13■□□□□ 0.33
SS18-216ENST00000580751 C16orf59Q7L2K0 433 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 IFNLR1Q8IU57 520 aaPredicted RBP17.13■□□□□ 0.33
SS18-216ENST00000580751 ZBTB8OSQ8IWT0 167 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 DBF4BQ8NFT6 615 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 TET1Q8NFU7 2136 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 DEPTORQ8TB45 409 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 DDX12PQ92771 950 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 VWCEQ96DN2 955 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.13■□□□□ 0.33
SS18-216ENST00000580751 MTIF3Q9H2K0 278 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms