RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ARHGAP28Q9P2N2 729 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 CTNND2Q9UQB3 1225 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 NFE2L3Q9Y4A8 694 aa16.83■□□□□ 0.28
SS18-215ENST00000580642 SMIM35A0A1B0GVV1 85 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 CALUO43852 315 aaPredicted RBP16.82■□□□□ 0.28
SS18-215ENST00000580642 PGK1P00558 417 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 SMIM10L2AP0DMW4 78 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 SMIM10L2BP0DMW5 78 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 GLRA2P23416 452 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 ADAM17P78536 824 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 BEX3Q00994 111 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 TPD52L1Q16890 204 aaPredicted RBP16.82■□□□□ 0.28
SS18-215ENST00000580642 SLC9C1Q4G0N8 1177 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 ZCWPW2Q504Y3 356 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 EFCAB12Q6NXP0 572 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 NFRKBQ6P4R8 1299 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 FBXO46Q6PJ61 603 aaPredicted RBP16.82■□□□□ 0.28
SS18-215ENST00000580642 SARM1Q6SZW1 724 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 MAEAQ7L5Y9 396 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 HS2ST1Q7LGA3 356 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 FAM114A1Q8IWE2 563 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 TMEM161BQ8NDZ6 487 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 CEP63Q96MT8 703 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 ACCSQ96QU6 501 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.82■□□□□ 0.28
SS18-215ENST00000580642 KCTD10Q9H3F6 313 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 SEMA6BQ9H3T3 888 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 GPRC5CQ9NQ84 441 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 PAK6Q9NQU5 681 aaPredicted RBP16.82■□□□□ 0.28
SS18-215ENST00000580642 MAPK8IP1Q9UQF2 711 aa16.82■□□□□ 0.28
SS18-215ENST00000580642 CCDC169A6NNP5 214 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 K7ENM7 598 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 GNA14O95837 355 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 ZNF18P17022 549 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 RPL13P26373 211 aaKnown RBP16.81■□□□□ 0.28
SS18-215ENST00000580642 FKBP3Q00688 224 aaKnown RBP16.81■□□□□ 0.28
SS18-215ENST00000580642 KCNA10Q16322 511 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 MARCH8Q5T0T0 291 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 TAF2Q6P1X5 1199 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 IFNLR1Q8IU57 520 aaPredicted RBP16.81■□□□□ 0.28
SS18-215ENST00000580642 C12orf56Q8IXR9 622 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 NME8Q8N427 588 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 C7orf31Q8N865 590 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 PRPF31Q8WWY3 499 aaKnown RBP16.81■□□□□ 0.28
SS18-215ENST00000580642 TMEM143Q96AN5 459 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 MED15Q96RN5 788 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 MAP7D2Q96T17 732 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 GBP3Q9H0R5 595 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 TBC1D7Q9P0N9 293 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 SUCLA2Q9P2R7 463 aaPredicted RBP16.81■□□□□ 0.28
SS18-215ENST00000580642 ARID2Q68CP9 1835 aa16.81■□□□□ 0.28
SS18-215ENST00000580642 MYADML2A6NDP7 307 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 ASGR1P07306 291 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 MYBP10242 640 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 EEF1GP26641 437 aaKnown RBP16.8■□□□□ 0.28
SS18-215ENST00000580642 NMT1P30419 496 aaKnown RBP16.8■□□□□ 0.28
SS18-215ENST00000580642 CASP5P51878 434 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 LAMTOR4Q0VGL1 99 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 MKRN4PQ13434 485 aaPredicted RBP16.8■□□□□ 0.28
SS18-215ENST00000580642 LRRC41Q15345 812 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 PCBP1Q15365 356 aaKnown RBP eCLIP16.8■□□□□ 0.28
SS18-215ENST00000580642 CDKAL1Q5VV42 579 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 CDCA2Q69YH5 1023 aaPredicted RBP16.8■□□□□ 0.28
SS18-215ENST00000580642 ANKRD40Q6AI12 368 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 ZNF410Q86VK4 478 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 SLC9A9Q8IVB4 645 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 MAP4K3Q8IVH8 894 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 ZBTB8OSQ8IWT0 167 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 ZC3H3Q8IXZ2 948 aaKnown RBP16.8■□□□□ 0.28
SS18-215ENST00000580642 CSGALNACT2Q8N6G5 542 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 ANKRD20A12PQ8NF67 263 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 DEPTORQ8TB45 409 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 LMBR1Q8WVP7 490 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 CTAGE1Q96RT6 745 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 SUGCTQ9HAC7 445 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 TBX20Q9UMR3 447 aa16.8■□□□□ 0.28
SS18-215ENST00000580642 C17orf102A2RUQ5 167 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 DENND3A2RUS2 1198 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 LRRC10BA6NIK2 292 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 KIAA0391O15091 583 aaKnown RBP16.79■□□□□ 0.28
SS18-215ENST00000580642 SLC16A4O15374 487 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 PRPF6O94906 941 aaKnown RBP16.79■□□□□ 0.28
SS18-215ENST00000580642 ACLYP53396 1101 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 CXCL17Q6UXB2 119 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 RPAINQ86UA6 219 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 METTL13Q8N6R0 699 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 GLIS3Q8NEA6 775 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 ASAP3Q8TDY4 903 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 BSNDQ8WZ55 320 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 DUSP9Q99956 384 aaKnown RBP16.79■□□□□ 0.28
SS18-215ENST00000580642 SETD4Q9NVD3 440 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 FANCLQ9NW38 375 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 GTF2IRD1Q9UHL9 959 aa16.79■□□□□ 0.28
SS18-215ENST00000580642 DNM1LO00429 736 aa16.78■□□□□ 0.28
SS18-215ENST00000580642 CETN3O15182 167 aa16.78■□□□□ 0.28
SS18-215ENST00000580642 PIGRP01833 764 aa16.78■□□□□ 0.28
SS18-215ENST00000580642 HOXD13P35453 343 aa16.78■□□□□ 0.28
SS18-215ENST00000580642 PHKA2P46019 1235 aa16.78■□□□□ 0.28
SS18-215ENST00000580642 STX17P56962 302 aa16.78■□□□□ 0.28
SS18-215ENST00000580642 IGBP1P78318 339 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms