RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 TRAIPQ9BWF2 469 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 LMAN2LQ9H0V9 348 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 ATP6V0A4Q9HBG4 840 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 IFT122Q9HBG6 1241 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 STK24Q9Y6E0 443 aa16.55■□□□□ 0.24
SS18-212ENST00000579061 A0A0U1RQF3 1178 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 H3BQV1 296 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 EOMESO95936 686 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 POU5F1BQ06416 359 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 LAMTOR4Q0VGL1 99 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 PTGDRQ13258 359 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 PDIA5Q14554 519 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 MXD4Q14582 209 aaPredicted RBP16.54■□□□□ 0.24
SS18-212ENST00000579061 HAUS3Q68CZ6 603 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 MCTP1Q6DN14 999 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 FERMT3Q86UX7 667 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 CATSPER3Q86XQ3 398 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 ECHDC2Q86YB7 292 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 KSR1Q8IVT5 923 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 NLRP4Q96MN2 994 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 NACC1Q96RE7 527 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 XPNPEP1Q9NQW7 623 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 PRDM6Q9NQX0 595 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.54■□□□□ 0.24
SS18-212ENST00000579061 DBR1Q9UK59 544 aaKnown RBP16.54■□□□□ 0.24
SS18-212ENST00000579061 COG5Q9UP83 839 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 PCDHB6Q9Y5E3 794 aa16.54■□□□□ 0.24
SS18-212ENST00000579061 MRPL42Q9Y6G3 142 aaKnown RBP16.54■□□□□ 0.24
SS18-212ENST00000579061 BRWD1Q9NSI6 2320 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 MYO7AQ13402 2215 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 MED24O75448 989 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 FGFR4P22455 802 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 PRPHP41219 470 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 GATMP50440 423 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 NBR1Q14596 966 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 PCBP1Q15365 356 aaKnown RBP eCLIP16.53■□□□□ 0.24
SS18-212ENST00000579061 LARP1BQ659C4 914 aaKnown RBP16.53■□□□□ 0.24
SS18-212ENST00000579061 PIGOQ8TEQ8 1089 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 RSPH1Q8WYR4 309 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 RAB34Q9BZG1 259 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 TMEM117Q9H0C3 514 aa16.53■□□□□ 0.24
SS18-212ENST00000579061 TBKBP1A7MCY6 615 aa16.52■□□□□ 0.24
SS18-212ENST00000579061 CSDE1O75534 798 aaKnown RBP16.52■□□□□ 0.24
SS18-212ENST00000579061 SRGAP2CP0DJJ0 459 aa16.52■□□□□ 0.24
SS18-212ENST00000579061 SKIP12755 728 aa16.52■□□□□ 0.24
SS18-212ENST00000579061 MRPS5P82675 430 aaKnown RBP16.52■□□□□ 0.24
SS18-212ENST00000579061 PAN2Q504Q3 1202 aaKnown RBP16.52■□□□□ 0.24
SS18-212ENST00000579061 TIGD5Q53EQ6 642 aa16.52■□□□□ 0.24
SS18-212ENST00000579061 FAM102BQ5T8I3 360 aa16.52■□□□□ 0.24
SS18-212ENST00000579061 CATSPER4Q7RTX7 472 aa16.52■□□□□ 0.24
SS18-212ENST00000579061 ZNF598Q86UK7 904 aaKnown RBP16.52■□□□□ 0.24
SS18-212ENST00000579061 IFNLR1Q8IU57 520 aaPredicted RBP16.52■□□□□ 0.24
SS18-212ENST00000579061 IGSF22Q8N9C0 903 aa16.52■□□□□ 0.24
SS18-212ENST00000579061 LRWD1Q9UFC0 647 aa16.52■□□□□ 0.24
SS18-212ENST00000579061 ATG2AQ2TAZ0 1938 aa16.52■□□□□ 0.23
SS18-212ENST00000579061 ZNF623O75123 536 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 IBSPP21815 317 aaPredicted RBP16.51■□□□□ 0.23
SS18-212ENST00000579061 ARL2P36404 184 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 PHKA2P46019 1235 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 RAB27AP51159 221 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 PTENP60484 403 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 TFDP1Q14186 410 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 SKIV2LQ15477 1246 aaKnown RBP16.51■□□□□ 0.23
SS18-212ENST00000579061 AAK1Q2M2I8 961 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 TJAP1Q5JTD0 557 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 RNF149Q8NC42 400 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 MCPH1Q8NEM0 835 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 SYMPKQ92797 1274 aaKnown RBP16.51■□□□□ 0.23
SS18-212ENST00000579061 AAASQ9NRG9 546 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 BMP2KQ9NSY1 1161 aaPredicted RBP16.51■□□□□ 0.23
SS18-212ENST00000579061 AGPAT5Q9NUQ2 364 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 RNF19AQ9NV58 838 aa16.51■□□□□ 0.23
SS18-212ENST00000579061 PIN4Q9Y237 131 aaKnown RBP16.51■□□□□ 0.23
SS18-212ENST00000579061 CUL9Q8IWT3 2517 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 DLL1O00548 723 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 PDCP20941 246 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 CCT6AP40227 531 aaKnown RBP16.5■□□□□ 0.23
SS18-212ENST00000579061 ATP2C1P98194 919 aaPredicted RBP16.5■□□□□ 0.23
SS18-212ENST00000579061 CSPP1Q1MSJ5 1256 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 TWF2Q6IBS0 349 aaKnown RBP16.5■□□□□ 0.23
SS18-212ENST00000579061 DTHD1Q6ZMT9 781 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 ABI1Q8IZP0 508 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 CASD1Q96PB1 797 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 ASB2Q96Q27 587 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 NFKBIZQ9BYH8 718 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 MINDY3Q9H8M7 445 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 PLAGL2Q9UPG8 496 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 PCDHB12Q9Y5F1 795 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 GTF3C3Q9Y5Q9 886 aa16.5■□□□□ 0.23
SS18-212ENST00000579061 GRM6O15303 877 aa16.49■□□□□ 0.23
SS18-212ENST00000579061 USO1O60763 962 aaKnown RBP16.49■□□□□ 0.23
SS18-212ENST00000579061 FGFR1P11362 822 aa16.49■□□□□ 0.23
SS18-212ENST00000579061 ATF7P17544 494 aaPredicted RBP16.49■□□□□ 0.23
SS18-212ENST00000579061 AXLP30530 894 aa16.49■□□□□ 0.23
SS18-212ENST00000579061 POTEGQ6S5H5 508 aa16.49■□□□□ 0.23
SS18-212ENST00000579061 BRAPQ7Z569 592 aa16.49■□□□□ 0.23
SS18-212ENST00000579061 HLA-CQ95604 372 aa16.49■□□□□ 0.23
SS18-212ENST00000579061 INTS4Q96HW7 963 aaKnown RBP16.49■□□□□ 0.23
SS18-212ENST00000579061 NSUN3Q9H649 340 aaKnown RBP16.49■□□□□ 0.23
SS18-212ENST00000579061 CWH43Q9H720 699 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms