RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 GPNMBQ14956 572 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 KIZQ2M2Z5 673 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 KRBA2Q6ZNG9 492 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.49□□□□□ -0.89
NUP88-211ENST00000575976 GRAMD1CQ8IYS0 662 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 DAW1Q8N136 415 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 CNNM3Q8NE01 707 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 BSNDQ8WZ55 320 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 DDX12PQ92771 950 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 KIFAP3Q92845 792 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 BADQ92934 168 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 DNAJC19Q96DA6 116 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 PAGE5Q96GU1 130 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 SCLYQ96I15 445 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 NLRP4Q96MN2 994 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 REEP2Q9BRK0 252 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 FDXACB1Q9BRP7 624 aaPredicted RBP9.49□□□□□ -0.89
NUP88-211ENST00000575976 TIPINQ9BVW5 301 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 BLZF1Q9H2G9 400 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 ADAMTS10Q9H324 1103 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 MAGEF1Q9HAY2 307 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 PRDM6Q9NQX0 595 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 GINS2Q9Y248 185 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 COL4A3BPQ9Y5P4 624 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 ARID2Q68CP9 1835 aa9.49□□□□□ -0.89
NUP88-211ENST00000575976 M0QZ92 97 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 SRGAP2CP0DJJ0 459 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 MCM4P33991 863 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 CRYBB1P53674 252 aaPredicted RBP9.48□□□□□ -0.89
NUP88-211ENST00000575976 AMPD3Q01432 767 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 CUL4BQ13620 913 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 CAPSQ13938 189 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 MXD4Q14582 209 aaPredicted RBP9.48□□□□□ -0.89
NUP88-211ENST00000575976 MBTPS1Q14703 1052 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 MFSD5Q6N075 450 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 RNF149Q8NC42 400 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 TMEM40Q8WWA1 233 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 NLRP7Q8WX94 980 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 DRC1Q96MC2 740 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 OSMRQ99650 979 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 C7orf25Q9BPX7 421 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 TRIM9Q9C026 710 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 LRRC27Q9C0I9 530 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 ZHX3Q9H4I2 956 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 DACT1Q9NYF0 836 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 ODF2LQ9ULJ1 636 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 VCANP13611 3396 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 EVPLQ92817 2033 aa9.48□□□□□ -0.89
NUP88-211ENST00000575976 LRRIQ4A6NIV6 560 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 NBNO60934 754 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 CSDE1O75534 798 aaKnown RBP9.47□□□□□ -0.89
NUP88-211ENST00000575976 FAM13AO94988 1023 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 PRR29P0C7W0 189 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 GHRP10912 638 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 PLS3P13797 630 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 IDEP14735 1019 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 CSF2RAP15509 400 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 NAMPTP43490 491 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 NPTX2P47972 431 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 ZNF131P52739 623 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 PEX3P56589 373 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 ASIC1P78348 528 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 CDC42EP1Q00587 391 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 MDM2Q00987 491 aaPredicted RBP9.47□□□□□ -0.89
NUP88-211ENST00000575976 TFDP1Q14186 410 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 LPIN1Q14693 890 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 PPP2R5AQ15172 486 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 LRIT3Q3SXY7 679 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 FBXO47Q5MNV8 452 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 ZNF410Q86VK4 478 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 ZNF710Q8N1W2 664 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 TMEM199Q8N511 208 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 VWCEQ96DN2 955 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 IFT74Q96LB3 600 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 TIGD1Q96MW7 591 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 SCLT1Q96NL6 688 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 KIFC3Q9BVG8 833 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 GCOM2Q9BZD3 368 aaPredicted RBP9.47□□□□□ -0.89
NUP88-211ENST00000575976 AGO3Q9H9G7 860 aaKnown RBP9.47□□□□□ -0.89
NUP88-211ENST00000575976 C17orf75Q9HAS0 396 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 IFT122Q9HBG6 1241 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 PANK4Q9NVE7 773 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 MTMR10Q9NXD2 777 aa9.47□□□□□ -0.89
NUP88-211ENST00000575976 NOC2LQ9Y3T9 749 aaKnown RBP9.47□□□□□ -0.89
NUP88-211ENST00000575976 LOXHD1Q8IVV2 1947 aa9.46□□□□□ -0.89
NUP88-211ENST00000575976 FRMD3A2A2Y4 597 aa9.46□□□□□ -0.9
NUP88-211ENST00000575976 CCDC169A6NNP5 214 aa9.46□□□□□ -0.9
NUP88-211ENST00000575976 GTPBP6O43824 516 aaPredicted RBP9.46□□□□□ -0.9
NUP88-211ENST00000575976 TRAK2O60296 914 aa9.46□□□□□ -0.9
NUP88-211ENST00000575976 KINO60870 393 aaKnown RBP9.46□□□□□ -0.9
NUP88-211ENST00000575976 TBCAO75347 108 aaKnown RBP9.46□□□□□ -0.9
NUP88-211ENST00000575976 PARNO95453 639 aaKnown RBP9.46□□□□□ -0.9
NUP88-211ENST00000575976 ACRP10323 421 aa9.46□□□□□ -0.9
NUP88-211ENST00000575976 DARSP14868 501 aaKnown RBP9.46□□□□□ -0.9
NUP88-211ENST00000575976 FGFR4P22455 802 aa9.46□□□□□ -0.9
NUP88-211ENST00000575976 EIF4BP23588 611 aaKnown RBP9.46□□□□□ -0.9
NUP88-211ENST00000575976 CD52P31358 61 aa9.46□□□□□ -0.9
NUP88-211ENST00000575976 PHKA2P46019 1235 aa9.46□□□□□ -0.9
NUP88-211ENST00000575976 PTENP60484 403 aa9.46□□□□□ -0.9
NUP88-211ENST00000575976 POU5F1BQ06416 359 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms