RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 SSU72P8A0A1W2PR75 194 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 C5orf60A6NFR6 353 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 H2AFZP0C0S5 128 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 NCALDP61601 193 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 SLC29A2Q14542 456 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 FIGNQ5HY92 759 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 ARL6IP4Q66PJ3 421 aaKnown RBP10.34□□□□□ -0.75
CCDC40-212ENST00000574799 CDCA2Q69YH5 1023 aaPredicted RBP10.34□□□□□ -0.75
CCDC40-212ENST00000574799 H2AFVQ71UI9 128 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 SH3BP5LQ7L8J4 393 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 SPATA21Q7Z572 469 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 ARHGAP22Q7Z5H3 698 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 STMN2Q93045 179 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 NAP1L3Q99457 506 aaPredicted RBP10.34□□□□□ -0.75
CCDC40-212ENST00000574799 VAT1LQ9HCJ6 419 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 TXLNGQ9NUQ3 528 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 SH3BP1Q9Y3L3 701 aa10.34□□□□□ -0.75
CCDC40-212ENST00000574799 PFDN1O60925 122 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 FGFR4P22455 802 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 RFC5P40937 340 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 RCN2Q14257 317 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 LLGL1Q15334 1064 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 DCAF17Q5H9S7 520 aaPredicted RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 ALKBH5Q6P6C2 394 aaKnown RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 ZNF572Q7Z3I7 529 aaPredicted RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 C1orf131Q8NDD1 294 aaKnown RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 EZH1Q92800 747 aaPredicted RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 ITFG2Q969R8 447 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 CEP95Q96GE4 821 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 INPP4AQ96PE3 977 aaPredicted RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 TTYH3Q9C0H2 523 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 CHCHD3Q9NX63 227 aaKnown RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 SLC5A4Q9NY91 659 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 TBK1Q9UHD2 729 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 PNMA3Q9UL41 463 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 ARL2BPQ9Y2Y0 163 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 ATAD5Q96QE3 1844 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 hCG_2014768A0A024R1R8 64 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 RIMBP2O15034 1052 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 PPP1R11O60927 126 aaPredicted RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 ACSL3O95573 720 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 MMP10P09238 476 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 GOLGA8HP0CJ92 632 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 SNHG28P0DPA3 235 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 GTF2IP78347 998 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 NFIAQ12857 509 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 ZNF268Q14587 947 aaPredicted RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 SLC18A3Q16572 532 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 MEI1Q5TIA1 1274 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 SEPT14Q6ZU15 432 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 METTL13Q8N6R0 699 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 ZNF513Q8N8E2 541 aaPredicted RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 DNAJC9Q8WXX5 260 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 RPS6KC1Q96S38 1066 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 TRIM9Q9C026 710 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 FESP07332 822 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 SKIP12755 728 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 JAG1P78504 1218 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 ZNF211Q13398 564 aaPredicted RBP10.33□□□□□ -0.76
CCDC40-212ENST00000574799 TMEM266Q2M3C6 531 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 SIAH1Q8IUQ4 282 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 CCDC105Q8IYK2 499 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 SYCE1Q8N0S2 351 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 FAM210AQ96ND0 272 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 PCDHA6Q9UN73 950 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 PTPN22Q9Y2R2 807 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 PCDHA8Q9Y5H6 950 aa10.33□□□□□ -0.76
CCDC40-212ENST00000574799 PARP14Q460N5 1801 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 CCDC160A6NGH7 325 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 RTN3O95197 1032 aaPredicted RBP10.32□□□□□ -0.76
CCDC40-212ENST00000574799 MYL1P05976 194 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 SHMT1P34896 483 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 SERPINB4P48594 390 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 CEP128Q6ZU80 1094 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 ARHGEF10LQ9HCE6 1279 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 DNAJC17Q9NVM6 304 aaKnown RBP10.32□□□□□ -0.76
CCDC40-212ENST00000574799 SPDYE5A6NIY4 337 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 ATP5DP30049 168 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 USP4Q13107 963 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 DBN1Q16643 649 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 DOK7Q18PE1 504 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 NAALADL2Q58DX5 795 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 NEDD1Q8NHV4 660 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 LRRC8CQ8TDW0 803 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 EPS8L3Q8TE67 593 aaKnown RBP10.32□□□□□ -0.76
CCDC40-212ENST00000574799 CTNNBL1Q8WYA6 563 aaPredicted RBP10.32□□□□□ -0.76
CCDC40-212ENST00000574799 GLG1Q92896 1179 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 L3MBTL3Q96JM7 780 aaPredicted RBP10.32□□□□□ -0.76
CCDC40-212ENST00000574799 SLITRK6Q9H5Y7 841 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 CEP72Q9P209 647 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 CENPFP49454 3210 aa10.32□□□□□ -0.76
CCDC40-212ENST00000574799 LINGO3P0C6S8 592 aa10.31□□□□□ -0.76
CCDC40-212ENST00000574799 RASSF2P50749 326 aa10.31□□□□□ -0.76
CCDC40-212ENST00000574799 NAPAP54920 295 aa10.31□□□□□ -0.76
CCDC40-212ENST00000574799 ZBTB16Q05516 673 aa10.31□□□□□ -0.76
CCDC40-212ENST00000574799 MIIPQ5JXC2 388 aa10.31□□□□□ -0.76
CCDC40-212ENST00000574799 ZNF365Q70YC5 407 aa10.31□□□□□ -0.76
CCDC40-212ENST00000574799 SYCP3Q8IZU3 236 aa10.31□□□□□ -0.76
CCDC40-212ENST00000574799 MCUR1Q96AQ8 359 aa10.31□□□□□ -0.76
CCDC40-212ENST00000574799 MRRFQ96E11 262 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms