RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 HLTFQ14527 1009 aaKnown RBP eCLIP24.74■■□□□ 1.55
VPS53-211ENST00000571805 SKIDA1Q1XH10 827 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 PHLDB3Q6NSJ2 640 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 BCAS4Q8TDM0 211 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 RIT2Q99578 217 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 MXRA8Q9BRK3 442 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 DEFB129Q9H1M3 183 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 FBXO28Q9NVF7 368 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 AMFRQ9UKV5 643 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 TTC7AQ9ULT0 858 aaPredicted RBP24.74■■□□□ 1.55
VPS53-211ENST00000571805 ZYXQ15942 572 aaKnown RBP24.74■■□□□ 1.55
VPS53-211ENST00000571805 FAM160B2Q86V87 743 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 NEUROG2Q9H2A3 272 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 PPP1R9AQ9ULJ8 1098 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 PLAAQ9Y263 795 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 DAAM1Q9Y4D1 1078 aa24.74■■□□□ 1.55
VPS53-211ENST00000571805 EXOC3O60645 756 aa24.73■■□□□ 1.55
VPS53-211ENST00000571805 ITGB5P18084 799 aa24.73■■□□□ 1.55
VPS53-211ENST00000571805 CCT5P48643 541 aa24.73■■□□□ 1.55
VPS53-211ENST00000571805 MYBPC2Q14324 1141 aa24.73■■□□□ 1.55
VPS53-211ENST00000571805 SLITRK6Q9H5Y7 841 aa24.73■■□□□ 1.55
VPS53-211ENST00000571805 TMEM51Q9NW97 253 aa24.73■■□□□ 1.55
VPS53-211ENST00000571805 DDX3YO15523 660 aaKnown RBP24.73■■□□□ 1.55
VPS53-211ENST00000571805 KIF22Q14807 665 aa24.73■■□□□ 1.55
VPS53-211ENST00000571805 SUPT20HQ8NEM7 779 aa24.73■■□□□ 1.55
VPS53-211ENST00000571805 AMACRQ9UHK6 382 aa24.73■■□□□ 1.55
VPS53-211ENST00000571805 HSD17B3P37058 310 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 PDCLQ13371 301 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 UAP1Q16222 522 aaPredicted RBP24.72■■□□□ 1.55
VPS53-211ENST00000571805 RSBN1LQ6PCB5 846 aaPredicted RBP24.72■■□□□ 1.55
VPS53-211ENST00000571805 FMNL3Q8IVF7 1028 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 CDAN1Q8IWY9 1227 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 SYCP3Q8IZU3 236 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 RDH13Q8NBN7 331 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 HOOK2Q96ED9 719 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 ATP6V1G3Q96LB4 118 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 TAS2R14Q9NYV8 317 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 FEM1BQ9UK73 627 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 ANKRD65E5RJM6 399 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 H0YGN5 161 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 FOXN3O00409 490 aaPredicted RBP24.72■■□□□ 1.55
VPS53-211ENST00000571805 CCDC172P0C7W6 258 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 ATP1A2P50993 1020 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 HSD17B4P51659 736 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 ARHGAP44Q17R89 818 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 PADI6Q6TGC4 694 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 LRIG3Q6UXM1 1119 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 PALB2Q86YC2 1186 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 NEK9Q8TD19 979 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 CTNNBL1Q8WYA6 563 aaPredicted RBP24.72■■□□□ 1.55
VPS53-211ENST00000571805 SEC14L1Q92503 715 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 ARHGEF26Q96DR7 871 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 RNPC3Q96LT9 517 aaKnown RBP24.72■■□□□ 1.55
VPS53-211ENST00000571805 NFS1Q9Y697 457 aa24.72■■□□□ 1.55
VPS53-211ENST00000571805 ABCB4P21439 1286 aa24.71■■□□□ 1.55
VPS53-211ENST00000571805 TNFAIP3P21580 790 aa24.71■■□□□ 1.55
VPS53-211ENST00000571805 POU5F1Q01860 360 aaKnown RBP24.71■■□□□ 1.55
VPS53-211ENST00000571805 PLS1Q14651 629 aa24.71■■□□□ 1.55
VPS53-211ENST00000571805 SAMD1Q6SPF0 538 aaPredicted RBP24.71■■□□□ 1.55
VPS53-211ENST00000571805 GMLQ99445 158 aa24.71■■□□□ 1.55
VPS53-211ENST00000571805 GLIS2Q9BZE0 524 aaPredicted RBP24.71■■□□□ 1.55
VPS53-211ENST00000571805 RABEP2Q9H5N1 569 aa24.71■■□□□ 1.55
VPS53-211ENST00000571805 DDX39AO00148 427 aaKnown RBP24.71■■□□□ 1.55
VPS53-211ENST00000571805 BCRP11274 1271 aa24.71■■□□□ 1.55
VPS53-211ENST00000571805 DLG4P78352 724 aa24.71■■□□□ 1.55
VPS53-211ENST00000571805 DLGAP5Q15398 846 aa24.71■■□□□ 1.55
VPS53-211ENST00000571805 DCAF12L1Q5VU92 463 aa24.71■■□□□ 1.55
VPS53-211ENST00000571805 TMBIM4Q9HC24 238 aa24.71■■□□□ 1.55
VPS53-211ENST00000571805 MAGEA9P43362 315 aa24.7■■□□□ 1.54
VPS53-211ENST00000571805 SPDYE2Q495Y8 402 aa24.7■■□□□ 1.54
VPS53-211ENST00000571805 MAATS1Q7Z4T9 603 aa24.7■■□□□ 1.54
VPS53-211ENST00000571805 TMEM174Q8WUU8 243 aa24.7■■□□□ 1.54
VPS53-211ENST00000571805 AGBL1Q96MI9 1066 aa24.7■■□□□ 1.54
VPS53-211ENST00000571805 THAP2Q9H0W7 228 aa24.7■■□□□ 1.54
VPS53-211ENST00000571805 COL20A1Q9P218 1284 aa24.7■■□□□ 1.54
VPS53-211ENST00000571805 HMGB1P1B2RPK0 211 aaPredicted RBP24.69■■□□□ 1.54
VPS53-211ENST00000571805 DHX15O43143 795 aaKnown RBP24.69■■□□□ 1.54
VPS53-211ENST00000571805 DAPK3O43293 454 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 TBC1D12O60347 775 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 RFX1P22670 979 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 PTGER2P43116 358 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 CEP85LQ5SZL2 805 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 CCDC26Q8TAB7 109 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 LRRC45Q96CN5 670 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 KCNH7Q9NS40 1196 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 COG5Q9UP83 839 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 NR2E1Q9Y466 385 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 RPTORQ8N122 1335 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 ANKRD62A6NC57 917 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 K7ENM7 598 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 TTI1O43156 1089 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 FGGP02679 453 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 NR1D1P20393 614 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 FLT3P36888 993 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 CAP2P40123 477 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 KCTD19Q17RG1 926 aaPredicted RBP24.69■■□□□ 1.54
VPS53-211ENST00000571805 MIER3Q7Z3K6 550 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 AGPAT1Q99943 283 aa24.69■■□□□ 1.54
VPS53-211ENST00000571805 DIS3Q9Y2L1 958 aaKnown RBP24.69■■□□□ 1.54
VPS53-211ENST00000571805 ZNF536O15090 1300 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms