RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 HEXIM2Q96MH2 286 aaKnown RBP16.44■□□□□ 0.22
CIITA-204ENST00000570546 FAM213AQ9BRX8 229 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 SLC38A10Q9HBR0 1119 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 KIAA1586Q9HCI6 787 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 FLT1P17948 1338 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 AGLP35573 1532 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 ECE2O60344 883 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 DCTN3O75935 186 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 ASNSP08243 561 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 ZSCAN20P17040 1043 aaPredicted RBP16.44■□□□□ 0.22
CIITA-204ENST00000570546 CCDC93Q567U6 631 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 RAPH1Q70E73 1250 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 EPM2AIP1Q7L775 607 aaPredicted RBP16.44■□□□□ 0.22
CIITA-204ENST00000570546 SRLQ86TD4 932 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 IPO5O00410 1097 aaKnown RBP16.44■□□□□ 0.22
CIITA-204ENST00000570546 TOM1L1O75674 476 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 NOA1Q8NC60 698 aaKnown RBP16.44■□□□□ 0.22
CIITA-204ENST00000570546 CCNYQ8ND76 341 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 SLC5A4Q9NY91 659 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 KIF3CO14782 793 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 GGPS1O95749 300 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 MCPH1Q8NEM0 835 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 RNPC3Q96LT9 517 aaKnown RBP16.44■□□□□ 0.22
CIITA-204ENST00000570546 PFASO15067 1338 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 EMSYQ7Z589 1322 aa16.44■□□□□ 0.22
CIITA-204ENST00000570546 SRGAP2CP0DJJ0 459 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 MAP7Q14244 749 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 PODNQ7Z5L7 613 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 RPAINQ86UA6 219 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 SRRM1Q8IYB3 904 aaKnown RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 FAM149B1Q96BN6 582 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 CHMP6Q96FZ7 201 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 RMDN3Q96TC7 470 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 AGPAT1Q99943 283 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 C11orf70Q9BRQ4 267 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 AFG3L2Q9Y4W6 797 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 DENND3A2RUS2 1198 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 MMP10P09238 476 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 CD44P16070 742 aaKnown RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 ARL4AP40617 200 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 ARL4CP56559 192 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 ZNF543Q08ER8 600 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 RNF169Q8NCN4 708 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 RPF1Q9H9Y2 349 aaKnown RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 RAVER2Q9HCJ3 691 aaKnown RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 RBM12Q9NTZ6 932 aaKnown RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 SLIT1O75093 1534 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 CHUKO15111 745 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 QARSP47897 775 aaKnown RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 NR1H3Q13133 447 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 TMEM270Q6UE05 265 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 FAM47EQ6ZV65 393 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 DEPDC1BQ8WUY9 529 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 SNX25Q9H3E2 840 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 SMYD2Q9NRG4 433 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 SMARCAL1Q9NZC9 954 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 SH3BP5O60239 455 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 NTSR2O95665 410 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 NMT1P30419 496 aaKnown RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 IFRD2Q12894 506 aaPredicted RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 DBN1Q16643 649 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 KRT27Q7Z3Y8 459 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 MAML1Q92585 1016 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 ESRRAP11474 423 aaPredicted RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 KRT39Q6A163 491 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 DCPSQ96C86 337 aaKnown RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 TUFT1Q9NNX1 390 aa16.43■□□□□ 0.22
CIITA-204ENST00000570546 NOP53Q9NZM5 478 aaKnown RBP16.43■□□□□ 0.22
CIITA-204ENST00000570546 XPOTO43592 962 aaKnown RBP16.42■□□□□ 0.22
CIITA-204ENST00000570546 KRT76Q01546 638 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 MMEL1Q495T6 779 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 RASIP1Q5U651 963 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 EEPD1Q7L9B9 569 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 SH2D3CQ8N5H7 860 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 SNF8Q96H20 258 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 ZBED1O96006 694 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 ADRA2BP18089 450 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 MDH1P40925 334 aaKnown RBP16.42■□□□□ 0.22
CIITA-204ENST00000570546 HNRNPLLQ8WVV9 542 aaKnown RBP16.42■□□□□ 0.22
CIITA-204ENST00000570546 RIN2Q8WYP3 895 aaPredicted RBP16.42■□□□□ 0.22
CIITA-204ENST00000570546 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.42■□□□□ 0.22
CIITA-204ENST00000570546 TTC25Q96NG3 672 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 MLXIPLQ9NP71 852 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 TPX2Q9ULW0 747 aaKnown RBP16.42■□□□□ 0.22
CIITA-204ENST00000570546 PALM3A6NDB9 673 aaPredicted RBP16.42■□□□□ 0.22
CIITA-204ENST00000570546 SMIM24O75264 130 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 BAG6P46379 1132 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 TOB1P50616 345 aaPredicted RBP16.42■□□□□ 0.22
CIITA-204ENST00000570546 ERVK-24P63145 666 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 NBPF9Q3BBW0 867 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 ZNF394Q53GI3 561 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 C16orf86Q6ZW13 317 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 SEPT12Q8IYM1 358 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 SAAL1Q96ER3 474 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 EPN3Q9H201 632 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 GSTA1P08263 222 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 GSTA2P09210 222 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 RASA1P20936 1047 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 SH3BGRP55822 239 aaPredicted RBP16.42■□□□□ 0.22
CIITA-204ENST00000570546 ATG16L1Q676U5 607 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms