RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 TMEM63CQ9P1W3 806 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 ODF2LQ9ULJ1 636 aa9.37□□□□□ -0.91
SF3B3-212ENST00000568539 FRMPD3Q5JV73 1810 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 CEP290O15078 2479 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 LAMA3Q16787 3333 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 PVALEFA0A1B0GWK0 134 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 SFI1A8K8P3 1242 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 KLRC4O43908 158 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 B4GALT4O60513 344 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 TBCAO75347 108 aaKnown RBP9.36□□□□□ -0.91
SF3B3-212ENST00000568539 CYP2C9P11712 490 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 IDEP14735 1019 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 TMOD1P28289 359 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 SARSP49591 514 aaKnown RBP9.36□□□□□ -0.91
SF3B3-212ENST00000568539 DNM2P50570 870 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 RTP1P59025 263 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 ASIC1P78348 528 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 EHHADHQ08426 723 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 PTK7Q13308 1070 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 CCDC183Q5T5S1 534 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 CAVIN1Q6NZI2 390 aaKnown RBP9.36□□□□□ -0.91
SF3B3-212ENST00000568539 TAF2Q6P1X5 1199 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 RBM43Q6ZSC3 357 aaKnown RBP9.36□□□□□ -0.91
SF3B3-212ENST00000568539 UNC13DQ70J99 1090 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 ANKRD33Q7Z3H0 272 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 NECAB2Q7Z6G3 386 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 FAM126BQ8IXS8 530 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 KIAA0319LQ8IZA0 1049 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 METTL13Q8N6R0 699 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 TCP11Q8WWU5 503 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 PRPF31Q8WWY3 499 aaKnown RBP9.36□□□□□ -0.91
SF3B3-212ENST00000568539 PSPC1Q8WXF1 523 aaKnown RBP9.36□□□□□ -0.91
SF3B3-212ENST00000568539 ERCC4Q92889 916 aaPredicted RBP9.36□□□□□ -0.91
SF3B3-212ENST00000568539 TRPV6Q9H1D0 765 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 POLR3FQ9H1D9 316 aaPredicted RBP9.36□□□□□ -0.91
SF3B3-212ENST00000568539 PANK4Q9NVE7 773 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 SUCLA2Q9P2R7 463 aaPredicted RBP9.36□□□□□ -0.91
SF3B3-212ENST00000568539 PCDHA5Q9Y5H7 936 aa9.36□□□□□ -0.91
SF3B3-212ENST00000568539 MROH7Q68CQ1 1323 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 FAM13AO94988 1023 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 SMC2O95347 1197 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 CD4P01730 458 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 RPN1P04843 607 aaKnown RBP9.35□□□□□ -0.91
SF3B3-212ENST00000568539 PLS3P13797 630 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 GAP43P17677 238 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 GLRA2P23416 452 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 COASYQ13057 564 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 CAPSQ13938 189 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 MXD4Q14582 209 aaPredicted RBP9.35□□□□□ -0.91
SF3B3-212ENST00000568539 KCNB1Q14721 858 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 LRRC26Q2I0M4 334 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 TRIM71Q2Q1W2 868 aaKnown RBP9.35□□□□□ -0.91
SF3B3-212ENST00000568539 TRIM60Q495X7 471 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 KMT5BQ4FZB7 885 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 NT5DC1Q5TFE4 455 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 RPAINQ86UA6 219 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 SFR1Q86XK3 245 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 CCDC65Q8IXS2 484 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 ASAP3Q8TDY4 903 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 PTCD2Q8WV60 388 aaKnown RBP9.35□□□□□ -0.91
SF3B3-212ENST00000568539 DNAJB3Q8WWF6 145 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 BSNDQ8WZ55 320 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 DHX38Q92620 1227 aaKnown RBP9.35□□□□□ -0.91
SF3B3-212ENST00000568539 WNT8BQ93098 351 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 SMARCE1Q969G3 411 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 SYAP1Q96A49 352 aaPredicted RBP9.35□□□□□ -0.91
SF3B3-212ENST00000568539 TOX2Q96NM4 488 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 GSDMAQ96QA5 445 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 FIZ1Q96SL8 496 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 MAP7D2Q96T17 732 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 FAM49AQ9H0Q0 323 aaPredicted RBP9.35□□□□□ -0.91
SF3B3-212ENST00000568539 ZHX3Q9H4I2 956 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 C17orf75Q9HAS0 396 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 PARVGQ9HBI0 331 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 KIAA1468Q9P260 1216 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 LARSQ9P2J5 1176 aaKnown RBP9.35□□□□□ -0.91
SF3B3-212ENST00000568539 COL4A3BPQ9Y5P4 624 aa9.35□□□□□ -0.91
SF3B3-212ENST00000568539 ASAP2O43150 1006 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 PQBP1O60828 265 aaKnown RBP9.34□□□□□ -0.91
SF3B3-212ENST00000568539 RHOBTB3O94955 611 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 VTNP04004 478 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 RPLP2P05387 115 aaKnown RBP9.34□□□□□ -0.91
SF3B3-212ENST00000568539 NAMPTP43490 491 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 NPTX2P47972 431 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 PEX3P56589 373 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 TLE2Q04725 743 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 LAMTOR4Q0VGL1 99 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 HERC4Q5GLZ8 1057 aaPredicted RBP9.34□□□□□ -0.91
SF3B3-212ENST00000568539 ODR4Q5SWX8 454 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 RHPN2Q8IUC4 686 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 KSR1Q8IVT5 923 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 NME8Q8N427 588 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 MYCT1Q8N699 235 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 SPIRE2Q8WWL2 714 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 HPS3Q969F9 1004 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 NTPCRQ9BSD7 190 aaKnown RBP9.34□□□□□ -0.91
SF3B3-212ENST00000568539 OLFML3Q9NRN5 406 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 EXOC1Q9NV70 894 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 RMND1Q9NWS8 449 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 SEL1LQ9UBV2 794 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms