RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 FOXP1Q9H334 677 aaPredicted RBP15.59■□□□□ 0.09
CLN3-235ENST00000568497 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.59■□□□□ 0.09
CLN3-235ENST00000568497 PCDHGC5Q9Y5F6 944 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 PCDHA10Q9Y5I2 948 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 MRPL42Q9Y6G3 142 aaKnown RBP15.59■□□□□ 0.09
CLN3-235ENST00000568497 VPS13AQ96RL7 3174 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 DMDP11532 3685 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 KIAA1671Q9BY89 1806 aa15.59■□□□□ 0.09
CLN3-235ENST00000568497 EVPLQ92817 2033 aa15.58■□□□□ 0.09
CLN3-235ENST00000568497 POTEMA6NI47 508 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 WDR64B1ANS9 1081 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 ZBTB42B2RXF5 422 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 PER2O15055 1255 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 NEMFO60524 1076 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 PSAPP07602 524 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 ADAM17P78536 824 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 PRKCEQ02156 737 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 PAN2Q504Q3 1202 aaKnown RBP15.58■□□□□ 0.08
CLN3-235ENST00000568497 MOXD1Q6UVY6 613 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 HSCBQ8IWL3 235 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 FAM177A1Q8N128 213 aaPredicted RBP15.58■□□□□ 0.08
CLN3-235ENST00000568497 KCNG4Q8TDN1 519 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 DYDC2Q96IM9 177 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 CNTNAP3BQ96NU0 1288 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 RIT2Q99578 217 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 APOL5Q9BWW9 433 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 CNTNAP3Q9BZ76 1288 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 TTC3P53804 2025 aa15.58■□□□□ 0.08
CLN3-235ENST00000568497 STBD1O95210 358 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 SRGAP2BP0DMP2 458 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 SPIRE1Q08AE8 756 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 IL17AQ16552 155 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 FOXD4L6Q3SYB3 417 aaPredicted RBP15.57■□□□□ 0.08
CLN3-235ENST00000568497 FAM160B1Q5W0V3 765 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 ASTLQ6HA08 431 aaPredicted RBP15.57■□□□□ 0.08
CLN3-235ENST00000568497 FOXD4L3Q6VB84 417 aaPredicted RBP15.57■□□□□ 0.08
CLN3-235ENST00000568497 UBALD2Q8IYN6 164 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 LRRC71Q8N4P6 559 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 ATP8B4Q8TF62 1192 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 SUSD6Q92537 303 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 SNX21Q969T3 373 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 CHAMP1Q96JM3 812 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 MTMR9Q96QG7 549 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 TUBE1Q9UJT0 475 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 SORCS3Q9UPU3 1222 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 IGSF9BQ9UPX0 1349 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 CACNA1GO43497 2377 aa15.57■□□□□ 0.08
CLN3-235ENST00000568497 DDX11L8A8MPP1 907 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 PP2D1A8MPX8 630 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 DGKIO75912 1065 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 GNAT1P11488 350 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 GCFC2P16383 781 aaKnown RBP15.56■□□□□ 0.08
CLN3-235ENST00000568497 SYT1P21579 422 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 IBSPP21815 317 aaPredicted RBP15.56■□□□□ 0.08
CLN3-235ENST00000568497 U2AF2P26368 475 aaKnown RBP eCLIP15.56■□□□□ 0.08
CLN3-235ENST00000568497 TECP42680 631 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 NPEPPSP55786 919 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 DRP2Q13474 957 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 PKP1Q13835 747 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 MTERF2Q49AM1 385 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 PLPPR4Q7Z2D5 763 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 KIAA2013Q8IYS2 634 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 C4orf32Q8N8J7 132 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 TTC12Q9H892 705 aaPredicted RBP15.56■□□□□ 0.08
CLN3-235ENST00000568497 CDHR5Q9HBB8 845 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 SEPT9Q9UHD8 586 aaPredicted RBP15.56■□□□□ 0.08
CLN3-235ENST00000568497 GINS2Q9Y248 185 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 NR2E1Q9Y466 385 aa15.56■□□□□ 0.08
CLN3-235ENST00000568497 MAFBQ9Y5Q3 323 aaPredicted RBP15.56■□□□□ 0.08
CLN3-235ENST00000568497 EPG5Q9HCE0 2579 aa15.55■□□□□ 0.08
CLN3-235ENST00000568497 ENPP3O14638 875 aa15.55■□□□□ 0.08
CLN3-235ENST00000568497 BRD1O95696 1058 aa15.55■□□□□ 0.08
CLN3-235ENST00000568497 KLRC1P26715 233 aa15.55■□□□□ 0.08
CLN3-235ENST00000568497 CDC25AP30304 524 aa15.55■□□□□ 0.08
CLN3-235ENST00000568497 CLCN3P51790 818 aa15.55■□□□□ 0.08
CLN3-235ENST00000568497 MTHFD1LQ6UB35 978 aa15.55■□□□□ 0.08
CLN3-235ENST00000568497 CMTR2Q8IYT2 770 aaKnown RBP15.55■□□□□ 0.08
CLN3-235ENST00000568497 VN1R2Q8NFZ6 395 aa15.55■□□□□ 0.08
CLN3-235ENST00000568497 HINFPQ9BQA5 517 aa15.55■□□□□ 0.08
CLN3-235ENST00000568497 MTMR6Q9Y217 621 aa15.55■□□□□ 0.08
CLN3-235ENST00000568497 PLXNA4Q9HCM2 1894 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 NCOR2Q9Y618 2525 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 NRCAMQ92823 1304 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 FSD2A1L4K1 749 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 CHRNA1P02708 482 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 VTNP04004 478 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 OATP04181 439 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 JAK3P52333 1124 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 CEBPZQ03701 1054 aaKnown RBP15.54■□□□□ 0.08
CLN3-235ENST00000568497 PTGDRQ13258 359 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 PPP2R5CQ13362 524 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 TPH2Q8IWU9 490 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 SMAP1Q8IYB5 467 aaPredicted RBP15.54■□□□□ 0.08
CLN3-235ENST00000568497 METTL13Q8N6R0 699 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 FLCNQ8NFG4 579 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 FAM20AQ96MK3 541 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 EIF2AK1Q9BQI3 630 aaKnown RBP15.54■□□□□ 0.08
CLN3-235ENST00000568497 SMOC2Q9H3U7 446 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 POLD4Q9HCU8 107 aa15.54■□□□□ 0.08
CLN3-235ENST00000568497 EP300Q09472 2414 aaPredicted RBP15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms