RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	ENTPD7	Q9NQZ7	604 aa		18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	MUTYH	Q9UIF7	546 aa		18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	DDX11L8	A8MPP1	907 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	MAF	O75444	373 aa	Predicted RBP	18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	SKI	P12755	728 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	STK3	Q13188	491 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	KCNC3	Q14003	757 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	CBX2	Q14781	532 aa	Predicted RBP	18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	CLLU1OS	Q5K130	101 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	PLPP4	Q5VZY2	271 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	PPP4R3A	Q6IN85	833 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	EXOC8	Q8IYI6	725 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	RNF169	Q8NCN4	708 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	EDA	Q92838	391 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	ZNF668	Q96K58	619 aa	Predicted RBP	18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	MFSD14A	Q96MC6	490 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	NAP1L4	Q99733	375 aa	Known RBP	18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	PHF20	Q9BVI0	1012 aa		18.92	■□□□□ 0.62
CLN3-231	ENST00000568422	CCDC194	A0A1B0GVG4	234 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	GCFC2	P16383	781 aa	Known RBP	18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	HOXB8	P17481	243 aa	Predicted RBP	18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	ALDH7A1	P49419	539 aa	Known RBP	18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	PPP2R5C	Q13362	524 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	DRP2	Q13474	957 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	BMS1	Q14692	1282 aa	Known RBP	18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	INF2	Q27J81	1249 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	LETM2	Q2VYF4	491 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	TMC7	Q7Z402	723 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	VN1R2	Q8NFZ6	395 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	SUSD6	Q92537	303 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	LARP6	Q9BRS8	491 aa	Known RBP	18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	SUCLA2	Q9P2R7	463 aa	Predicted RBP	18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	PPME1	Q9Y570	386 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	STK36	Q9NRP7	1315 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422	MUC6	Q6W4X9	2439 aa		18.91	■□□□□ 0.62
CLN3-231	ENST00000568422		A0A087WZ62	844 aa		18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	FGFR4	P22455	802 aa		18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	PHKA2	P46019	1235 aa		18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	QARS	P47897	775 aa	Known RBP	18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	SMC1A	Q14683	1233 aa	Known RBP	18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	ANKRD54	Q6NXT1	300 aa		18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	ANO5	Q75V66	913 aa		18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	NEK8	Q86SG6	692 aa		18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	RHPN2	Q8IUC4	686 aa		18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	HELQ	Q8TDG4	1101 aa		18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	AIFM3	Q96NN9	605 aa		18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	FDXACB1	Q9BRP7	624 aa	Predicted RBP	18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	SLK	Q9H2G2	1235 aa	Predicted RBP	18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	KCNMB3	Q9NPA1	279 aa		18.9	■□□□□ 0.62
CLN3-231	ENST00000568422	TMEM150B	A6NC51	233 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	HIDE1	A8MVS5	230 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	TBX3	O15119	743 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	SLC37A4	O43826	429 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	CSDE1	O75534	798 aa	Known RBP	18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	P4HB	P07237	508 aa	Known RBP	18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	TEC	P42680	631 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	RAB27A	P51159	221 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	RBM10	P98175	930 aa	Known RBP	18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	SCRN1	Q12765	414 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	TWF2	Q6IBS0	349 aa	Known RBP	18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	HFE2	Q6ZVN8	426 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	BMP8A	Q7Z5Y6	402 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	SLC39A11	Q8N1S5	342 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	MRPL43	Q8N983	215 aa	Known RBP	18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	SLC7A3	Q8WY07	619 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	CYP26B1	Q9NR63	512 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	VAV3	Q9UKW4	847 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	KCNJ14	Q9UNX9	436 aa		18.89	■□□□□ 0.61
CLN3-231	ENST00000568422	ZNF623	O75123	536 aa		18.88	■□□□□ 0.61
CLN3-231	ENST00000568422	PBX3	P40426	434 aa		18.88	■□□□□ 0.61
CLN3-231	ENST00000568422	BCAR1	P56945	870 aa		18.88	■□□□□ 0.61
CLN3-231	ENST00000568422	GLB1L	Q6UWU2	654 aa		18.88	■□□□□ 0.61
CLN3-231	ENST00000568422	WASF1	Q92558	559 aa		18.88	■□□□□ 0.61
CLN3-231	ENST00000568422	CASP10	Q92851	521 aa		18.88	■□□□□ 0.61
CLN3-231	ENST00000568422	S1PR5	Q9H228	398 aa		18.88	■□□□□ 0.61
CLN3-231	ENST00000568422	EML1	O00423	815 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	GAS2	O43903	313 aa	Known RBP	18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	PFKFB2	O60825	505 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	RFC5	P40937	340 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	ANKRD1	Q15327	319 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	TPRN	Q4KMQ1	711 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	WDFY4	Q6ZS81	3184 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	CATSPER4	Q7RTX7	472 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	TMEM169	Q96HH4	297 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	RPGRIP1	Q96KN7	1286 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	SH2D3A	Q9BRG2	576 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	FAM105A	Q9NUU6	356 aa		18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	PIN4	Q9Y237	131 aa	Known RBP	18.87	■□□□□ 0.61
CLN3-231	ENST00000568422	ZNF318	Q5VUA4	2279 aa		18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	TECTA	O75443	2155 aa		18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	ARID2	Q68CP9	1835 aa		18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	C2orf71	A6NGG8	1288 aa		18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	MARCH6	O60337	910 aa		18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	CCNT1	O60563	726 aa	Known RBP	18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	BAG4	O95429	457 aa	Known RBP	18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	POLG	P54098	1239 aa	Predicted RBP	18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	ANAPC15	P60006	121 aa		18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	ZXDA	P98168	799 aa		18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	GIT2	Q14161	759 aa		18.86	■□□□□ 0.61
CLN3-231	ENST00000568422	PLA2G4F	Q68DD2	849 aa		18.86	■□□□□ 0.61

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