RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	RRP36	Q96EU6	259 aa	Known RBP	13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	IGSF21	Q96ID5	467 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	KLHL5	Q96PQ7	755 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	MYADM	Q96S97	322 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	MXRA8	Q9BRK3	442 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	SDF4	Q9BRK5	362 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	DSCC1	Q9BVC3	393 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	ARHGEF3	Q9NR81	526 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	PCDHA6	Q9UN73	950 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	PCDHA8	Q9Y5H6	950 aa		13.41	□□□□□ -0.26
CLK3-222	ENST00000568232	DDX39A	O00148	427 aa	Known RBP	13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	CNP	P09543	421 aa	Known RBP	13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	SLC26A2	P50443	739 aa		13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	POLG	P54098	1239 aa	Predicted RBP	13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	NLRP11	P59045	1033 aa	Known RBP	13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	NONO	Q15233	471 aa	Known RBP eCLIP	13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	ZNF484	Q5JVG2	852 aa		13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	DCLRE1A	Q6PJP8	1040 aa		13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	C15orf39	Q6ZRI6	1047 aa		13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	PPFIBP1	Q86W92	1011 aa		13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	CCDC60	Q8IWA6	550 aa	Predicted RBP	13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	PJA1	Q8NG27	643 aa		13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	RTKN	Q9BST9	563 aa		13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	MYL10	Q9BUA6	226 aa		13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	SCUBE2	Q9NQ36	999 aa		13.4	□□□□□ -0.26
CLK3-222	ENST00000568232	NFASC	O94856	1347 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232		A0A0U1RQF3	1178 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	CCDC195	A0A1B0GUA6	201 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	hCG_1642624	A0A1W2PR95	340 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	PRR5-ARHGAP8	B1AHC4	643 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	GALT	P07902	379 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	TGM1	P22735	817 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	CLCN3	P51790	818 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	ARHGAP8	P85298	464 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	SWSAP1	Q6NVH7	229 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	PDXDC2P	Q6P474	469 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	ABHD15	Q6UXT9	468 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	CMTR1	Q8N1G2	835 aa	Known RBP	13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	GPR161	Q8N6U8	529 aa	Known RBP	13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	LPP	Q93052	612 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	MRPL9	Q9BYD2	267 aa	Known RBP	13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	ADAMTS10	Q9H324	1103 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	NRDE2	Q9H7Z3	1164 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	AGO4	Q9HCK5	861 aa	Known RBP	13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	WDR6	Q9NNW5	1121 aa	Known RBP	13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	SPATA6	Q9NWH7	488 aa	Predicted RBP	13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	EPS15L1	Q9UBC2	864 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	DNAJB4	Q9UDY4	337 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	USP18	Q9UMW8	372 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	COL1A2	P08123	1366 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	FANCM	Q8IYD8	2048 aa		13.39	□□□□□ -0.27
CLK3-222	ENST00000568232	COL4A3	Q01955	1670 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	SPDYE3	A6NKU9	549 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	B4GALT3	O60512	393 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	CSDE1	O75534	798 aa	Known RBP	13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	EIF4B	P23588	611 aa	Known RBP	13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	LMNB2	Q03252	620 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	CSTF1	Q05048	431 aa	Known RBP	13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	COL9A3	Q14050	684 aa	Predicted RBP	13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	PGBD1	Q96JS3	809 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	SPZ1	Q9BXG8	430 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	EMILIN2	Q9BXX0	1053 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	GBP3	Q9H0R5	595 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	IL25	Q9H293	177 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	PARD6A	Q9NPB6	346 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	ZNF302	Q9NR11	478 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	MAN1C1	Q9NR34	630 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	DIAPH3	Q9NSV4	1193 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	SEC63	Q9UGP8	760 aa	Known RBP	13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	AKT3	Q9Y243	479 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	MTF2	Q9Y483	593 aa	Predicted RBP	13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	C2orf16	Q68DN1	1984 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	CLUH	O75153	1309 aa		13.38	□□□□□ -0.27
CLK3-222	ENST00000568232	ERICH2	A1L162	156 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	MEIS3P2	A8K0S8	358 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	SPTLC1	O15269	473 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	LAMTOR5	O43504	91 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	LILRB3	O75022	631 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	RFPL2	O75678	378 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	PLEKHA8P1	O95397	391 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	SLC11A1	P49279	550 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	STARD6	P59095	220 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	ZNF528	Q3MIS6	628 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	PPM1J	Q5JR12	505 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	FAM160B1	Q5W0V3	765 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	CATIP	Q7Z7H3	387 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	CKAP2L	Q8IYA6	745 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	LRRC71	Q8N4P6	559 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	SRBD1	Q8N5C6	995 aa	Known RBP	13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	ATRIP	Q8WXE1	791 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	RPP25	Q9BUL9	199 aa	Known RBP	13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	TBC1D13	Q9NVG8	400 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	SMG5	Q9UPR3	1016 aa	Known RBP	13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	INPP5F	Q9Y2H2	1132 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	TAF6L	Q9Y6J9	622 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	FRY	Q5TBA9	3013 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	ASPM	Q8IZT6	3477 aa		13.37	□□□□□ -0.27
CLK3-222	ENST00000568232	C2CD2L	O14523	706 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	INPPL1	O15357	1258 aa		13.36	□□□□□ -0.27
CLK3-222	ENST00000568232	SPATA31D3	P0C874	917 aa		13.36	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms