RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 KCNG1Q9UIX4 513 aa4.23□□□□□ -1.73
VPS35-207ENST00000568191 ST20-MTHFSA0A0A6YYL1 179 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 PPP1R12AO14974 1030 aaPredicted RBP4.22□□□□□ -1.73
VPS35-207ENST00000568191 IPO13O94829 963 aaKnown RBP4.22□□□□□ -1.73
VPS35-207ENST00000568191 PEX11BO96011 259 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 VSIG10L2P0DP72 767 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 SLC9A1P19634 815 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 XPAP23025 273 aaPredicted RBP4.22□□□□□ -1.73
VPS35-207ENST00000568191 SCNN1BP51168 640 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 NPEPPSP55786 919 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 SMAD3P84022 425 aaKnown RBP4.22□□□□□ -1.73
VPS35-207ENST00000568191 TUBA3CQ13748 450 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 ZNF460Q14592 562 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 TUBA3EQ6PEY2 450 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 C16orf86Q6ZW13 317 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 GAREM2Q75VX8 874 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 C11orf74Q86VG3 221 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 UIMC1Q96RL1 719 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 ELF4Q99607 663 aaPredicted RBP4.22□□□□□ -1.73
VPS35-207ENST00000568191 OSBPL6Q9BZF3 934 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 PCED1AQ9H1Q7 454 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 SLITRK6Q9H5Y7 841 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 ZNF703Q9H7S9 590 aaPredicted RBP4.22□□□□□ -1.73
VPS35-207ENST00000568191 IL23AQ9NPF7 189 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 USP36Q9P275 1121 aaKnown RBP4.22□□□□□ -1.73
VPS35-207ENST00000568191 NCDNQ9UBB6 729 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 MAGEL2Q9UJ55 1249 aa4.22□□□□□ -1.73
VPS35-207ENST00000568191 REXO2Q9Y3B8 237 aaKnown RBP4.22□□□□□ -1.73
VPS35-207ENST00000568191 WDR33Q9C0J8 1336 aaKnown RBP4.21□□□□□ -1.73
VPS35-207ENST00000568191 GOLGA6L6A8MZA4 724 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 NRP1O14786 923 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 PRPF6O94906 941 aaKnown RBP4.21□□□□□ -1.74
VPS35-207ENST00000568191 PTX3P26022 381 aaPredicted RBP4.21□□□□□ -1.74
VPS35-207ENST00000568191 MAN2A2P49641 1150 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 KPNA1P52294 538 aaPredicted RBP4.21□□□□□ -1.74
VPS35-207ENST00000568191 PURAQ00577 322 aaKnown RBP4.21□□□□□ -1.74
VPS35-207ENST00000568191 FKBP15Q5T1M5 1219 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 KIAA1841Q6NSI8 718 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 ESPNLQ6ZVH7 1005 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 CLEC14AQ86T13 490 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 TMPRSS6Q8IU80 811 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 PPM1KQ8N3J5 372 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 EFHBQ8N7U6 833 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 FERMT2Q96AC1 680 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 ORAI3Q9BRQ5 295 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 NOL10Q9BSC4 688 aaKnown RBP4.21□□□□□ -1.74
VPS35-207ENST00000568191 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.21□□□□□ -1.74
VPS35-207ENST00000568191 OXSMQ9NWU1 459 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 DNAI1Q9UI46 699 aa4.21□□□□□ -1.74
VPS35-207ENST00000568191 A0A0A6YYJ9 748 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 KRTAP23-1A1A580 65 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 UBE2QL1A1L167 161 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 C2orf78A6NCI8 922 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 DVL2O14641 736 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 NRP2O60462 931 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 KPNA6O60684 536 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 RAB11FIP3O75154 756 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 PPFIA4O75335 1185 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 TOX4O94842 621 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 F2P00734 622 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 SLPIP03973 132 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 GNAT2P19087 354 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 SDSP20132 328 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 KIR2DL3P43628 341 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 ANTXR2P58335 489 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 LRRC32Q14392 662 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 RRP1BQ14684 758 aaKnown RBP4.2□□□□□ -1.74
VPS35-207ENST00000568191 ELAVL1Q15717 326 aaKnown RBP4.2□□□□□ -1.74
VPS35-207ENST00000568191 CNNM4Q6P4Q7 775 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 LRRTM3Q86VH5 581 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 CMTM4Q8IZR5 234 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 BCL6BQ8N143 479 aaPredicted RBP4.2□□□□□ -1.74
VPS35-207ENST00000568191 IL17DQ8TAD2 202 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 ZNF483Q8TF39 744 aaPredicted RBP4.2□□□□□ -1.74
VPS35-207ENST00000568191 NKD2Q969F2 451 aaPredicted RBP4.2□□□□□ -1.74
VPS35-207ENST00000568191 MYL10Q9BUA6 226 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 EPC1Q9H2F5 836 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 MTG2Q9H4K7 406 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 AGO3Q9H9G7 860 aaKnown RBP4.2□□□□□ -1.74
VPS35-207ENST00000568191 PLAAQ9Y263 795 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 SH3BP1Q9Y3L3 701 aa4.2□□□□□ -1.74
VPS35-207ENST00000568191 C1SP09871 688 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 ATP2A2P16615 1042 aaKnown RBP4.19□□□□□ -1.74
VPS35-207ENST00000568191 LSP1P33241 339 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 NRG3P56975 720 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 KLF10Q13118 480 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 KANSL1Q7Z3B3 1105 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 AMER2Q8N7J2 671 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 OR2W6PQ8NHA6 318 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 CACTINQ8WUQ7 758 aaKnown RBP4.19□□□□□ -1.74
VPS35-207ENST00000568191 NINJ1Q92982 152 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 FAM193BQ96PV7 902 aaPredicted RBP4.19□□□□□ -1.74
VPS35-207ENST00000568191 GPR87Q9BY21 358 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 TRIM8Q9BZR9 551 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 PITHD1Q9GZP4 211 aaPredicted RBP4.19□□□□□ -1.74
VPS35-207ENST00000568191 POFUT1Q9H488 388 aa4.19□□□□□ -1.74
VPS35-207ENST00000568191 PLSCR1O15162 318 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 MTSS1O43312 755 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 NARSO43776 548 aaKnown RBP4.18□□□□□ -1.74
VPS35-207ENST00000568191 OPHN1O60890 802 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms