RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 FAM177A1Q8N128 213 aaPredicted RBP16.79■□□□□ 0.28
CLN3-228ENST00000567804 SLC39A11Q8N1S5 342 aa16.79■□□□□ 0.28
CLN3-228ENST00000567804 HELQQ8TDG4 1101 aa16.79■□□□□ 0.28
CLN3-228ENST00000567804 MFSD14AQ96MC6 490 aa16.79■□□□□ 0.28
CLN3-228ENST00000567804 FBXL18Q96ME1 805 aa16.79■□□□□ 0.28
CLN3-228ENST00000567804 AIFM3Q96NN9 605 aa16.79■□□□□ 0.28
CLN3-228ENST00000567804 TM6SF1Q9BZW5 370 aa16.79■□□□□ 0.28
CLN3-228ENST00000567804 SPG21Q9NZD8 308 aa16.79■□□□□ 0.28
CLN3-228ENST00000567804 CSDE1O75534 798 aaKnown RBP16.78■□□□□ 0.28
CLN3-228ENST00000567804 TECP42680 631 aa16.78■□□□□ 0.28
CLN3-228ENST00000567804 CDC42EP1Q00587 391 aa16.78■□□□□ 0.28
CLN3-228ENST00000567804 KRT17Q04695 432 aa16.78■□□□□ 0.28
CLN3-228ENST00000567804 NONOQ15233 471 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLN3-228ENST00000567804 GALNT17Q6IS24 598 aa16.78■□□□□ 0.28
CLN3-228ENST00000567804 ANKRD54Q6NXT1 300 aa16.78■□□□□ 0.28
CLN3-228ENST00000567804 BMP8AQ7Z5Y6 402 aa16.78■□□□□ 0.28
CLN3-228ENST00000567804 RPGRIP1Q96KN7 1286 aa16.78■□□□□ 0.28
CLN3-228ENST00000567804 SH2D3AQ9BRG2 576 aa16.78■□□□□ 0.28
CLN3-228ENST00000567804 LARP6Q9BRS8 491 aaKnown RBP16.78■□□□□ 0.28
CLN3-228ENST00000567804 MRPL9Q9BYD2 267 aaKnown RBP16.78■□□□□ 0.28
CLN3-228ENST00000567804 GCOM2Q9BZD3 368 aaPredicted RBP16.78■□□□□ 0.28
CLN3-228ENST00000567804 S1PR5Q9H228 398 aa16.78■□□□□ 0.28
CLN3-228ENST00000567804 CHST12Q9NRB3 414 aa16.78■□□□□ 0.28
CLN3-228ENST00000567804 A0A087WZ62 844 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 MAFO75444 373 aaPredicted RBP16.77■□□□□ 0.28
CLN3-228ENST00000567804 DNM2P50570 870 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 ZXDAP98168 799 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 NHLH1Q02575 133 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 STK3Q13188 491 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 INF2Q27J81 1249 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 LLGL2Q6P1M3 1020 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 SYCE2Q6PIF2 218 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 CPLX2Q6PUV4 134 aaKnown RBP16.77■□□□□ 0.28
CLN3-228ENST00000567804 TRIM67Q6ZTA4 783 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 TMC7Q7Z402 723 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 ZNF410Q86VK4 478 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 FDXACB1Q9BRP7 624 aaPredicted RBP16.77■□□□□ 0.28
CLN3-228ENST00000567804 TRAIPQ9BWF2 469 aa16.77■□□□□ 0.28
CLN3-228ENST00000567804 DDX25Q9UHL0 483 aaKnown RBP16.77■□□□□ 0.28
CLN3-228ENST00000567804 DENND4AQ7Z401 1863 aa16.77■□□□□ 0.27
CLN3-228ENST00000567804 MYO10Q9HD67 2058 aa16.76■□□□□ 0.27
CLN3-228ENST00000567804 TMEM221A6NGB7 291 aa16.76■□□□□ 0.27
CLN3-228ENST00000567804 M0R296 226 aa16.76■□□□□ 0.27
CLN3-228ENST00000567804 SLC37A4O43826 429 aa16.76■□□□□ 0.27
CLN3-228ENST00000567804 SFPQP23246 707 aaKnown RBP eCLIP16.76■□□□□ 0.27
CLN3-228ENST00000567804 PHKA2P46019 1235 aa16.76■□□□□ 0.27
CLN3-228ENST00000567804 SMC1AQ14683 1233 aaKnown RBP16.76■□□□□ 0.27
CLN3-228ENST00000567804 ANO5Q75V66 913 aa16.76■□□□□ 0.27
CLN3-228ENST00000567804 KRT25Q7Z3Z0 450 aa16.76■□□□□ 0.27
CLN3-228ENST00000567804 ALYREFQ86V81 257 aaKnown RBP16.76■□□□□ 0.27
CLN3-228ENST00000567804 RHPN2Q8IUC4 686 aa16.76■□□□□ 0.27
CLN3-228ENST00000567804 SUCLA2Q9P2R7 463 aaPredicted RBP16.76■□□□□ 0.27
CLN3-228ENST00000567804 DDX11L8A8MPP1 907 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 NT5C1B-RDH14C9J2C7 533 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 EML1O00423 815 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 HOXB8P17481 243 aaPredicted RBP16.75■□□□□ 0.27
CLN3-228ENST00000567804 BCAR1P56945 870 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 PSMC5P62195 406 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 LETM2Q2VYF4 491 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 PLA2G4FQ68DD2 849 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 TWF2Q6IBS0 349 aaKnown RBP16.75■□□□□ 0.27
CLN3-228ENST00000567804 KSR1Q8IVT5 923 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 MRPL43Q8N983 215 aaKnown RBP16.75■□□□□ 0.27
CLN3-228ENST00000567804 RSPH1Q8WYR4 309 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 CASP10Q92851 521 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 PHF20Q9BVI0 1012 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 APOL5Q9BWW9 433 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 INO80BQ9C086 356 aaPredicted RBP16.75■□□□□ 0.27
CLN3-228ENST00000567804 KCNMB3Q9NPA1 279 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 PPP4R2Q9NY27 417 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 VAV3Q9UKW4 847 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 KCNJ14Q9UNX9 436 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 PIN4Q9Y237 131 aaKnown RBP16.75■□□□□ 0.27
CLN3-228ENST00000567804 HCFC2Q9Y5Z7 792 aa16.75■□□□□ 0.27
CLN3-228ENST00000567804 C2orf71A6NGG8 1288 aa16.74■□□□□ 0.27
CLN3-228ENST00000567804 ALDH7A1P49419 539 aaKnown RBP16.74■□□□□ 0.27
CLN3-228ENST00000567804 PPP2R5CQ13362 524 aa16.74■□□□□ 0.27
CLN3-228ENST00000567804 LPPQ93052 612 aa16.74■□□□□ 0.27
CLN3-228ENST00000567804 PBXIP1Q96AQ6 731 aa16.74■□□□□ 0.27
CLN3-228ENST00000567804 TMEM169Q96HH4 297 aa16.74■□□□□ 0.27
CLN3-228ENST00000567804 NLRP4Q96MN2 994 aa16.74■□□□□ 0.27
CLN3-228ENST00000567804 JPH2Q9BR39 696 aaPredicted RBP16.74■□□□□ 0.27
CLN3-228ENST00000567804 CYP26B1Q9NR63 512 aa16.74■□□□□ 0.27
CLN3-228ENST00000567804 PDRG1Q9NUG6 133 aa16.74■□□□□ 0.27
CLN3-228ENST00000567804 FAM105AQ9NUU6 356 aa16.74■□□□□ 0.27
CLN3-228ENST00000567804 ZDBF2Q9HCK1 2354 aa16.74■□□□□ 0.27
CLN3-228ENST00000567804 TDRD15B5MCY1 1934 aaKnown RBP16.74■□□□□ 0.27
CLN3-228ENST00000567804 STK36Q9NRP7 1315 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 C2orf16Q68DN1 1984 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 CCDC194A0A1B0GVG4 234 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 CLASP2O75122 1294 aaKnown RBP16.73■□□□□ 0.27
CLN3-228ENST00000567804 ZC3H11AO75152 810 aaKnown RBP eCLIP16.73■□□□□ 0.27
CLN3-228ENST00000567804 SKIP12755 728 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 QARSP47897 775 aaKnown RBP16.73■□□□□ 0.27
CLN3-228ENST00000567804 RAB27AP51159 221 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 SIGLEC14Q08ET2 396 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 SCRN1Q12765 414 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 PPP4R3AQ6IN85 833 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 CATSPER4Q7RTX7 472 aa16.73■□□□□ 0.27
CLN3-228ENST00000567804 NEK8Q86SG6 692 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms