RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MARCKSL1P49006 195 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 FMO5P49326 533 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 LLGL1Q15334 1064 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 RINT1Q6NUQ1 792 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 CYB5D1Q6P9G0 228 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 ERP44Q9BS26 406 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 RAB17Q9H0T7 212 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 EPB41L4BQ9H329 900 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 ZMYM2Q9UBW7 1377 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 CHUKO15111 745 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 CHN1P15882 459 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 PSMC2P35998 433 aaKnown RBP14.3□□□□□ -0.12
CLN3-210ENST00000563874 NPEPPSP55786 919 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 IFI35P80217 286 aaPredicted RBP14.3□□□□□ -0.12
CLN3-210ENST00000563874 PPATQ06203 517 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 FUKQ8N0W3 1084 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 CRYGNQ8WXF5 182 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 RNF25Q96BH1 459 aaPredicted RBP14.3□□□□□ -0.12
CLN3-210ENST00000563874 BORCS6Q96GS4 357 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 XPO6Q96QU8 1125 aaKnown RBP14.3□□□□□ -0.12
CLN3-210ENST00000563874 INTUQ9ULD6 942 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 TMEM253P0C7T8 217 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 LMNB1P20700 586 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 TNFAIP3P21580 790 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 SLC29A2Q14542 456 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 BMT2Q1RMZ1 405 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 DUPD1Q68J44 220 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 JAMLQ86YT9 394 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 CHMP6Q96FZ7 201 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 RBM17Q96I25 401 aaKnown RBP14.3□□□□□ -0.12
CLN3-210ENST00000563874 STK33Q9BYT3 514 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 GPR88Q9GZN0 384 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 ZDHHC18Q9NUE0 388 aa14.3□□□□□ -0.12
CLN3-210ENST00000563874 GOLGA6L10A0A0M3HER8 536 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 MMEP08473 750 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 PAEPP09466 180 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 PMS2P54278 862 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 GSCP56915 257 aaPredicted RBP14.29□□□□□ -0.12
CLN3-210ENST00000563874 PLCB4Q15147 1175 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 SLC20A1Q8WUM9 679 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 KRT35Q92764 455 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 TLCD1Q96CP7 247 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 HVCN1Q96D96 273 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 MTFR1LQ9H019 292 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 AZI2Q9H6S1 392 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 ACTR5Q9H9F9 607 aaPredicted RBP14.29□□□□□ -0.12
CLN3-210ENST00000563874 VAV3Q9UKW4 847 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 NRAPQ86VF7 1730 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 ATAD5Q96QE3 1844 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.29□□□□□ -0.12
CLN3-210ENST00000563874 C5orf60A6NFR6 353 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 PPP1R12BO60237 982 aaPredicted RBP14.29□□□□□ -0.12
CLN3-210ENST00000563874 SERPINB2P05120 415 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 ANXA13P27216 316 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 UBXN2AP68543 259 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 AP3B2Q13367 1082 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 CRY2Q49AN0 593 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 DENND2CQ68D51 928 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 ZNF746Q6NUN9 644 aaPredicted RBP14.29□□□□□ -0.12
CLN3-210ENST00000563874 NEK9Q8TD19 979 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 AMNQ9BXJ7 453 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 TXLNGYQ9BZA5 131 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 CCDC113Q9H0I3 377 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 GLT8D2Q9H1C3 349 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 SEMA4AQ9H3S1 761 aa14.29□□□□□ -0.12
CLN3-210ENST00000563874 FOXN3O00409 490 aaPredicted RBP14.28□□□□□ -0.12
CLN3-210ENST00000563874 GDF11O95390 407 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 EYA4O95677 639 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 IFNAR2P48551 515 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 KLRC3Q07444 240 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 DRP2Q13474 957 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 Q4G0T1 1027 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 KIAA1755Q5JYT7 1200 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 ERMARDQ5T6L9 678 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 EGFL6Q8IUX8 553 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 PARP9Q8IXQ6 854 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 C8orf37Q96NL8 207 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 INTS2Q9H0H0 1204 aaKnown RBP14.28□□□□□ -0.12
CLN3-210ENST00000563874 PRDM16Q9HAZ2 1276 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 ALG6Q9Y672 507 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 GTPBP10A4D1E9 387 aaKnown RBP14.28□□□□□ -0.12
CLN3-210ENST00000563874 FGFR4P22455 802 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 E2F5Q15329 346 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 CCDC38Q502W7 563 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 PHLDB3Q6NSJ2 640 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 ZDHHC24Q6UX98 284 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 FAM228AQ86W67 206 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 FBXO11Q86XK2 927 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 CCT6BQ92526 530 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 HOOK2Q96ED9 719 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 DYDC2Q96IM9 177 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 CARD9Q9H257 536 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 PABPC3Q9H361 631 aaKnown RBP14.28□□□□□ -0.12
CLN3-210ENST00000563874 CXorf56Q9H5V9 222 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 CTTNBP2NLQ9P2B4 639 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 NCANO14594 1321 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 SRCAPQ6ZRS2 3230 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 KIAA0391O15091 583 aaKnown RBP14.28□□□□□ -0.12
CLN3-210ENST00000563874 HOOK3Q86VS8 718 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 CPNE8Q86YQ8 564 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms