RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 MAML2Q8IZL2 1156 aaPredicted RBP11.79□□□□□ -0.52
SF3B3-204ENST00000563739 SIX5Q8N196 739 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 VPS52Q8N1B4 723 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 CCDC82Q8N4S0 544 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 LPPQ93052 612 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 IGSF21Q96ID5 467 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 LZTS2Q9BRK4 669 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 LRRC2Q9BYS8 371 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 NRDE2Q9H7Z3 1164 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 DNAJB4Q9UDY4 337 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 RBM8AQ9Y5S9 174 aaKnown RBP11.79□□□□□ -0.52
SF3B3-204ENST00000563739 COL4A2P08572 1712 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 NOTCH4Q99466 2003 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 BACH1O14867 736 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 HOXA2O43364 376 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 STBD1O95210 358 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 CXCL14O95715 111 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 EIF4BP23588 611 aaKnown RBP11.78□□□□□ -0.52
SF3B3-204ENST00000563739 KIF5BP33176 963 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 SLC11A1P49279 550 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 CLCN4P51793 760 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 TDGQ13569 410 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 KIAA2013Q8IYS2 634 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 DCLK2Q8N568 766 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 BBXQ8WY36 941 aaPredicted RBP11.78□□□□□ -0.52
SF3B3-204ENST00000563739 MTA3Q9BTC8 594 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 MFSD1Q9H3U5 465 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 FAM217BQ9NTX9 383 aaPredicted RBP11.78□□□□□ -0.52
SF3B3-204ENST00000563739 TBC1D13Q9NVG8 400 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 DBR1Q9UK59 544 aaKnown RBP11.78□□□□□ -0.52
SF3B3-204ENST00000563739 ARID2Q68CP9 1835 aa11.78□□□□□ -0.52
SF3B3-204ENST00000563739 GALTP07902 379 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 LIFRP42702 1097 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 KRT17Q04695 432 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 SART3Q15020 963 aaKnown RBP11.77□□□□□ -0.53
SF3B3-204ENST00000563739 TARBP2Q15633 366 aaKnown RBP11.77□□□□□ -0.53
SF3B3-204ENST00000563739 FAM160B1Q5W0V3 765 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 PPP1R18Q6NYC8 613 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 DDX53Q86TM3 631 aaKnown RBP11.77□□□□□ -0.53
SF3B3-204ENST00000563739 SGMS1Q86VZ5 419 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 ZNF280BQ86YH2 543 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 RNF168Q8IYW5 571 aaPredicted RBP11.77□□□□□ -0.53
SF3B3-204ENST00000563739 PLCD3Q8N3E9 789 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 SUMF1Q8NBK3 374 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 RNF169Q8NCN4 708 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 RIN2Q8WYP3 895 aaPredicted RBP11.77□□□□□ -0.53
SF3B3-204ENST00000563739 ZNF707Q96C28 371 aaPredicted RBP11.77□□□□□ -0.53
SF3B3-204ENST00000563739 CNTNAP3BQ96NU0 1288 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 KLHL5Q96PQ7 755 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 MYADMQ96S97 322 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 CNTNAP3Q9BZ76 1288 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 LSG1Q9H089 658 aaKnown RBP11.77□□□□□ -0.53
SF3B3-204ENST00000563739 SFXN1Q9H9B4 322 aa11.77□□□□□ -0.53
SF3B3-204ENST00000563739 FASNP49327 2511 aaKnown RBP11.76□□□□□ -0.53
SF3B3-204ENST00000563739 TMEM150BA6NC51 233 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 IPO5O00410 1097 aaKnown RBP11.76□□□□□ -0.53
SF3B3-204ENST00000563739 ZC3H11AO75152 810 aaKnown RBP eCLIP11.76□□□□□ -0.53
SF3B3-204ENST00000563739 LRRN2O75325 713 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 LMNAP02545 664 aaKnown RBP11.76□□□□□ -0.53
SF3B3-204ENST00000563739 CYP3A4P08684 503 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 CNPP09543 421 aaKnown RBP11.76□□□□□ -0.53
SF3B3-204ENST00000563739 PHKA2P46019 1235 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 GNAQP50148 359 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 POLGP54098 1239 aaPredicted RBP11.76□□□□□ -0.53
SF3B3-204ENST00000563739 COL9A2Q14055 689 aaPredicted RBP11.76□□□□□ -0.53
SF3B3-204ENST00000563739 ATAT1Q5SQI0 421 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 ODR4Q5SWX8 454 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 EFCAB12Q6NXP0 572 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 CCDC149Q6ZUS6 474 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 MICU3Q86XE3 530 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 PLA2G4DQ86XP0 818 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 FANCBQ8NB91 859 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 TNPO1Q92973 898 aaKnown RBP11.76□□□□□ -0.53
SF3B3-204ENST00000563739 RTP3Q9BQQ7 232 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 TRAIPQ9BWF2 469 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 MARCH5Q9NX47 278 aa11.76□□□□□ -0.53
SF3B3-204ENST00000563739 IGKV6-21A0A0C4DH24 114 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 F8W810 466 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 ABCB7O75027 752 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 OFD1O75665 1012 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 DDHD2O94830 711 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 CFHP08603 1231 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 SP9P0CG40 484 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 ADCY7P51828 1080 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 AP3B2Q13367 1082 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 LETM2Q2VYF4 491 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 LONRF3Q496Y0 759 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 ZNF746Q6NUN9 644 aaPredicted RBP11.75□□□□□ -0.53
SF3B3-204ENST00000563739 MIS18BP1Q6P0N0 1132 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 APOA5Q6Q788 366 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 TRMT1LQ7Z2T5 733 aaKnown RBP11.75□□□□□ -0.53
SF3B3-204ENST00000563739 DGLUCYQ7Z3D6 616 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 METTL13Q8N6R0 699 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 CMASQ8NFW8 434 aaPredicted RBP11.75□□□□□ -0.53
SF3B3-204ENST00000563739 EXOC6Q8TAG9 804 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 TMEM169Q96HH4 297 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 TMEM87BQ96K49 555 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 MRPL9Q9BYD2 267 aaKnown RBP11.75□□□□□ -0.53
SF3B3-204ENST00000563739 TBC1D17Q9HA65 648 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 EPS15L1Q9UBC2 864 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms