RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 RUSC1Q9BVN2 902 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 VPS16Q9H269 839 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 OLFML3Q9NRN5 406 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.84□□□□□ -0.83
VPS39-207ENST00000563692 TBC1D7Q9P0N9 293 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 LARSQ9P2J5 1176 aaKnown RBP9.84□□□□□ -0.83
VPS39-207ENST00000563692 TBX21Q9UL17 535 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 PCDHB13Q9Y5F0 798 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 MCM3APO60318 1980 aa9.84□□□□□ -0.83
VPS39-207ENST00000563692 AKR1B15C9JRZ8 316 aaPredicted RBP9.83□□□□□ -0.84
VPS39-207ENST00000563692 PES1O00541 588 aaKnown RBP9.83□□□□□ -0.84
VPS39-207ENST00000563692 PDXKO00764 312 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 CETN3O15182 167 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 EIF3DO15371 548 aaKnown RBP eCLIP9.83□□□□□ -0.84
VPS39-207ENST00000563692 GH1P01241 217 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 MAPTP10636 758 aaKnown RBP9.83□□□□□ -0.84
VPS39-207ENST00000563692 SKILP12757 684 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 PRKCSHP14314 528 aaPredicted RBP9.83□□□□□ -0.84
VPS39-207ENST00000563692 ITGB8P26012 769 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 ALCAMQ13740 583 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 TRIM14Q14142 442 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 NOLC1Q14978 699 aaKnown RBP eCLIP9.83□□□□□ -0.84
VPS39-207ENST00000563692 KNOP1Q1ED39 458 aaKnown RBP9.83□□□□□ -0.84
VPS39-207ENST00000563692 EDRF1Q3B7T1 1238 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 XKR9Q5GH70 373 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 FAM47CQ5HY64 1035 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 FKBP15Q5T1M5 1219 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 MFSD5Q6N075 450 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 SWSAP1Q6NVH7 229 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 IRF2BP1Q8IU81 584 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 KIAA1524Q8TCG1 905 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 ZNF507Q8TCN5 953 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 SCFD1Q8WVM8 642 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 DRC1Q96MC2 740 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 NOC4LQ9BVI4 516 aaKnown RBP9.83□□□□□ -0.84
VPS39-207ENST00000563692 NUP58Q9BVL2 599 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 MTIF3Q9H2K0 278 aaKnown RBP9.83□□□□□ -0.84
VPS39-207ENST00000563692 HIPK3Q9H422 1215 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 RRAGDQ9NQL2 400 aaPredicted RBP9.83□□□□□ -0.84
VPS39-207ENST00000563692 TAB2Q9NYJ8 693 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 GABBR1Q9UBS5 961 aa9.83□□□□□ -0.84
VPS39-207ENST00000563692 ITIH6Q6UXX5 1313 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 A0A1W2PQC6 194 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 BACH1O14867 736 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 ZBTB39O15060 712 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 CCP110O43303 1012 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 RGS20O76081 388 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 GCNT3O95395 438 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 CCNE2O96020 404 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 RARRES1P49788 294 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 ZNF131P52739 623 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 CHMP4BP1P59074 171 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 ACTR2P61160 394 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 PURAQ00577 322 aaKnown RBP9.82□□□□□ -0.84
VPS39-207ENST00000563692 TBC1D8BQ0IIM8 1120 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 TBX2Q13207 712 aaPredicted RBP9.82□□□□□ -0.84
VPS39-207ENST00000563692 ADAM9Q13443 819 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 BMT2Q1RMZ1 405 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 TSR1Q2NL82 804 aaKnown RBP9.82□□□□□ -0.84
VPS39-207ENST00000563692 ODR4Q5SWX8 454 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 C9orf50Q5SZB4 431 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 TMEM63BQ5T3F8 832 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 ZNF697Q5TEC3 545 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 PSRC1Q6PGN9 363 aaPredicted RBP9.82□□□□□ -0.84
VPS39-207ENST00000563692 ABHD15Q6UXT9 468 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 APTXQ7Z2E3 356 aaKnown RBP9.82□□□□□ -0.84
VPS39-207ENST00000563692 SFR1Q86XK3 245 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 NELFCDQ8IXH7 590 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 FAM178BQ8IXR5 827 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 SLC43A3Q8NBI5 491 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 GOLGA5Q8TBA6 731 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 IQCDQ96DY2 449 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 CCDC51Q96ER9 411 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 CNOT6LQ96LI5 555 aaKnown RBP9.82□□□□□ -0.84
VPS39-207ENST00000563692 PPP1R12CQ9BZL4 782 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 KCNF1Q9H3M0 494 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 MLXIPQ9HAP2 919 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 NRBP2Q9NSY0 501 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 WRAP73Q9P2S5 460 aaPredicted RBP9.82□□□□□ -0.84
VPS39-207ENST00000563692 TRAF3IP3Q9Y228 551 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 NOD1Q9Y239 953 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 UBE4BO95155 1302 aa9.82□□□□□ -0.84
VPS39-207ENST00000563692 LAMA3Q16787 3333 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 A6NJR5 290 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 SFI1A8K8P3 1242 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 LGALS16A8MUM7 142 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 TEX33O43247 280 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 B4GALT4O60513 344 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 HIP1RO75146 1068 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 ATG7O95352 703 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 CD4P01730 458 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 ABCD1P33897 745 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 PBX1P40424 430 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 SMTNP53814 917 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 SMAD3P84022 425 aaKnown RBP9.81□□□□□ -0.84
VPS39-207ENST00000563692 PPP2R3AQ06190 1150 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 LRMPQ12912 555 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 LAMC2Q13753 1193 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 MAN2A1Q16706 1144 aa9.81□□□□□ -0.84
VPS39-207ENST00000563692 DGKDQ16760 1214 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms