RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FAXDC2Q96IV6 333 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 NAPGQ99747 312 aaPredicted RBP8.21□□□□□ -1.1
VPS39-204ENST00000561818 IFIH1Q9BYX4 1025 aaKnown RBP8.21□□□□□ -1.1
VPS39-204ENST00000561818 SMARCAD1Q9H4L7 1026 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 FAM124BQ9H5Z6 455 aaPredicted RBP8.21□□□□□ -1.1
VPS39-204ENST00000561818 TMEM134Q9H6X4 195 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 NHEJ1Q9H9Q4 299 aaPredicted RBP8.21□□□□□ -1.1
VPS39-204ENST00000561818 MLXIPQ9HAP2 919 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 KMT5AQ9NQR1 393 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 TRMT1Q9NXH9 659 aaKnown RBP8.21□□□□□ -1.1
VPS39-204ENST00000561818 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.21□□□□□ -1.1
VPS39-204ENST00000561818 GABBR1Q9UBS5 961 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 ZNF215Q9UL58 517 aaPredicted RBP8.21□□□□□ -1.1
VPS39-204ENST00000561818 RIPK3Q9Y572 518 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 COL1A2P08123 1366 aa8.21□□□□□ -1.1
VPS39-204ENST00000561818 COL11A1P12107 1806 aaPredicted RBP8.2□□□□□ -1.1
VPS39-204ENST00000561818 DNAJC25-GNG10A0A024R161 153 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 MANSC4A6NHS7 340 aaPredicted RBP8.2□□□□□ -1.1
VPS39-204ENST00000561818 DDX39AO00148 427 aaKnown RBP8.2□□□□□ -1.1
VPS39-204ENST00000561818 MAGEB2O15479 319 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 PIGRP01833 764 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 MYBP10242 640 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 PRKCIP41743 596 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 STAT1P42224 750 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 MYL7Q01449 175 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 MAPK7Q13164 816 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 GRM1Q13255 1194 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 LAMC2Q13753 1193 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 BMS1Q14692 1282 aaKnown RBP8.2□□□□□ -1.1
VPS39-204ENST00000561818 LRRC41Q15345 812 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 ASIC2Q16515 512 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 TDRD12Q587J7 1177 aaKnown RBP8.2□□□□□ -1.1
VPS39-204ENST00000561818 DCAF17Q5H9S7 520 aaPredicted RBP8.2□□□□□ -1.1
VPS39-204ENST00000561818 FAM102BQ5T8I3 360 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 IER5Q5VY09 327 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 PDXDC1Q6P996 788 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 ZPBP2Q6X784 338 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 ZBTB8OSQ8IWT0 167 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 REXO1L1PQ8IX06 675 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 DEPTORQ8TB45 409 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 ZNF592Q92610 1267 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 GJA10Q969M2 543 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 SLC35C1Q96A29 364 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 FIZ1Q96SL8 496 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 GBA2Q9HCG7 927 aaPredicted RBP8.2□□□□□ -1.1
VPS39-204ENST00000561818 FAM207AQ9NSI2 230 aaPredicted RBP8.2□□□□□ -1.1
VPS39-204ENST00000561818 GCNT4Q9P109 453 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 SEPT9Q9UHD8 586 aaPredicted RBP8.2□□□□□ -1.1
VPS39-204ENST00000561818 LCMT1Q9UIC8 334 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 TBX20Q9UMR3 447 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.2□□□□□ -1.1
VPS39-204ENST00000561818 SYNGAP1Q96PV0 1343 aa8.2□□□□□ -1.1
VPS39-204ENST00000561818 SOWAHDA6NJG2 315 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 TGFB1I1O43294 461 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 HBP1O60381 514 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 LGR5O75473 907 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 AKAP3O75969 853 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 FARP2O94887 1054 aaPredicted RBP8.19□□□□□ -1.1
VPS39-204ENST00000561818 PRPF6O94906 941 aaKnown RBP8.19□□□□□ -1.1
VPS39-204ENST00000561818 CCNE2O96020 404 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 UCHL3P15374 230 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 PRLRP16471 622 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 TCP1P17987 556 aaKnown RBP8.19□□□□□ -1.1
VPS39-204ENST00000561818 UBA1P22314 1058 aaKnown RBP8.19□□□□□ -1.1
VPS39-204ENST00000561818 TMOD1P28289 359 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 FMO5P49326 533 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 STAT5BP51692 787 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 VAMP7P51809 220 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 KIF11P52732 1056 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 PEX3P56589 373 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 RAD51AP2Q09MP3 1159 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 KLHL30Q0D2K2 578 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 EMC2Q15006 297 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 SLC18A3Q16572 532 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 CCDC122Q5T0U0 273 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 TREML2Q5T2D2 321 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 PRAMEF18Q5VWM3 479 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 SWSAP1Q6NVH7 229 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 SYT10Q6XYQ8 523 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 RRAGAQ7L523 313 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 SYCE1Q8N0S2 351 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 TMEM161BQ8NDZ6 487 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 PSPC1Q8WXF1 523 aaKnown RBP8.19□□□□□ -1.1
VPS39-204ENST00000561818 UBXN4Q92575 508 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 TAF4BQ92750 862 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 SECISBP2LQ93073 1101 aaKnown RBP8.19□□□□□ -1.1
VPS39-204ENST00000561818 HPS3Q969F9 1004 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 NOX5Q96PH1 765 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 PAGR1Q9BTK6 254 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 LSM14BQ9BX40 385 aaKnown RBP8.19□□□□□ -1.1
VPS39-204ENST00000561818 NFKBIZQ9BYH8 718 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 STK33Q9BYT3 514 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 PORCNQ9H237 461 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 DHX33Q9H6R0 707 aaKnown RBP8.19□□□□□ -1.1
VPS39-204ENST00000561818 ERAP1Q9NZ08 941 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 BTBD7Q9P203 1132 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 ARHGAP28Q9P2N2 729 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 APEX2Q9UBZ4 518 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 JRKLQ9Y4A0 524 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 ZNF236Q9UL36 1845 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms