RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RMND1Q9NWS8 449 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 DACT1Q9NYF0 836 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 A0A1W2PPC1 479 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 CCDC169A6NNP5 214 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 TIMP1P01033 207 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 MAPTP10636 758 aaKnown RBP10.2□□□□□ -0.78
LDLR-210ENST00000559340 CKBP12277 381 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 PLS3P13797 630 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 EFNA5P52803 228 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 NLRP11P59045 1033 aaKnown RBP10.2□□□□□ -0.78
LDLR-210ENST00000559340 ALCAMQ13740 583 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 HIC1Q14526 733 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 POSTNQ15063 836 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 ARSHQ5FYA8 562 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 HERC4Q5GLZ8 1057 aaPredicted RBP10.2□□□□□ -0.78
LDLR-210ENST00000559340 RUFY4Q6ZNE9 571 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 UNC13DQ70J99 1090 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 TMEM199Q8N511 208 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 SPIRE2Q8WWL2 714 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 NLRP7Q8WX94 980 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 STAMQ92783 540 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 SMARCE1Q969G3 411 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 REEP2Q9BRK0 252 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 KMT5AQ9NQR1 393 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 PRDM5Q9NQX1 630 aaPredicted RBP10.2□□□□□ -0.78
LDLR-210ENST00000559340 TBX21Q9UL17 535 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 CDY2AQ9Y6F7 541 aa10.2□□□□□ -0.78
LDLR-210ENST00000559340 MKI67P46013 3256 aaKnown RBP10.2□□□□□ -0.78
LDLR-210ENST00000559340 TET1Q8NFU7 2136 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 SCN5AQ14524 2016 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 TANC1Q9C0D5 1861 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 LRRIQ4A6NIV6 560 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 GPR182O15218 404 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 TRAK2O60296 914 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 KIF20AO95235 890 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 VTNP04004 478 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 SRGAP2CP0DJJ0 459 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 GLRA2P23416 452 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 GPC3P51654 580 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 ZNF131P52739 623 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 PEX3P56589 373 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 PTENP60484 403 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 RAD51AP2Q09MP3 1159 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 MKRN4PQ13434 485 aaPredicted RBP10.19□□□□□ -0.78
LDLR-210ENST00000559340 TRIM71Q2Q1W2 868 aaKnown RBP10.19□□□□□ -0.78
LDLR-210ENST00000559340 ZNF618Q5T7W0 954 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 LRRC8DQ7L1W4 858 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 IFNLR1Q8IU57 520 aaPredicted RBP10.19□□□□□ -0.78
LDLR-210ENST00000559340 FAM178BQ8IXR5 827 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 C7orf61Q8IZ16 206 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 RNF149Q8NC42 400 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 LRRC15Q8TF66 581 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 DNAJC19Q96DA6 116 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 NLRP4Q96MN2 994 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 GSDMAQ96QA5 445 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 LBHD1Q9BQE6 289 aaPredicted RBP10.19□□□□□ -0.78
LDLR-210ENST00000559340 NTPCRQ9BSD7 190 aaKnown RBP10.19□□□□□ -0.78
LDLR-210ENST00000559340 NOC4LQ9BVI4 516 aaKnown RBP10.19□□□□□ -0.78
LDLR-210ENST00000559340 NFKBIZQ9BYH8 718 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 NUP62CLQ9H1M0 184 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 TMEM134Q9H6X4 195 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 EXOC1Q9NV70 894 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 PCDHB13Q9Y5F0 798 aa10.19□□□□□ -0.78
LDLR-210ENST00000559340 A0A087WZ62 844 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.18□□□□□ -0.78
LDLR-210ENST00000559340 NPHP3-ACAD11A0A0J9YXS1 232 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 FRMD3A2A2Y4 597 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 SFI1A8K8P3 1242 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 K7ERI5 159 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 GPR32O75388 356 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 RPS6KA5O75582 802 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 LETM1O95202 739 aaPredicted RBP10.18□□□□□ -0.78
LDLR-210ENST00000559340 RPN1P04843 607 aaKnown RBP10.18□□□□□ -0.78
LDLR-210ENST00000559340 PFKMP08237 780 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 IQCF3P0C7M6 154 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 SFPQP23246 707 aaKnown RBP eCLIP10.18□□□□□ -0.78
LDLR-210ENST00000559340 EIF4BP23588 611 aaKnown RBP10.18□□□□□ -0.78
LDLR-210ENST00000559340 DPYDQ12882 1025 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 STRN3Q13033 797 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 MAPK7Q13164 816 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 PPIGQ13427 754 aaKnown RBP eCLIP10.18□□□□□ -0.781e-6■■■□□ 17.2
LDLR-210ENST00000559340 CUL4BQ13620 913 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 KCNB1Q14721 858 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 MAPK6Q16659 721 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 MFSD5Q6N075 450 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 APBB1IPQ7Z5R6 666 aaPredicted RBP10.18□□□□□ -0.78
LDLR-210ENST00000559340 ASAP3Q8TDY4 903 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 DHX38Q92620 1227 aaKnown RBP10.18□□□□□ -0.78
LDLR-210ENST00000559340 HVCN1Q96D96 273 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 CTAGE1Q96RT6 745 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 FDXACB1Q9BRP7 624 aaPredicted RBP10.18□□□□□ -0.78
LDLR-210ENST00000559340 PPP1R12CQ9BZL4 782 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 BLZF1Q9H2G9 400 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 ADAMTS10Q9H324 1103 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 PRO3102Q9H379 93 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 CLSTN2Q9H4D0 955 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 MRPL44Q9H9J2 332 aaKnown RBP10.18□□□□□ -0.78
LDLR-210ENST00000559340 GPRC5CQ9NQ84 441 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 OLFML3Q9NRN5 406 aa10.18□□□□□ -0.78
LDLR-210ENST00000559340 PRMT7Q9NVM4 692 aaPredicted RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms