RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 POC1B-GALNT4F8VUJ3 575 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 G3V3G9 751 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 CALUO43852 315 aaPredicted RBP12.22□□□□□ -0.45
LDLR-208ENST00000558518 UFL1O94874 794 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 FTLP02792 175 aaPredicted RBP12.22□□□□□ -0.45
LDLR-208ENST00000558518 BRAFP15056 766 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 NQO1P15559 274 aaKnown RBP12.22□□□□□ -0.45
LDLR-208ENST00000558518 RBM5P52756 815 aaKnown RBP eCLIP12.22□□□□□ -0.45
LDLR-208ENST00000558518 XRCC4Q13426 336 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 DCAF8Q5TAQ9 597 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 THEMIS2Q5TEJ8 643 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 CEP63Q96MT8 703 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 TAOK3Q9H2K8 898 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 DHX36Q9H2U1 1008 aaKnown RBP12.22□□□□□ -0.45
LDLR-208ENST00000558518 ATP6V0A4Q9HBG4 840 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 SLAIN2Q9P270 581 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 LMTK3Q96Q04 1460 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 THAP12O43422 761 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 TMED2Q15363 201 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 SHROOM1Q2M3G4 852 aaPredicted RBP12.22□□□□□ -0.45
LDLR-208ENST00000558518 EPC2Q52LR7 807 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 SBK1Q52WX2 424 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 FAM182AQ5T1J6 154 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 DCAF12L1Q5VU92 463 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 LONP2Q86WA8 852 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 DAGLBQ8NCG7 672 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 SPZ1Q9BXG8 430 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 NT5C3AQ9H0P0 336 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 KDM4CQ9H3R0 1056 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 TRPC6Q9Y210 931 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 C15orf41Q9Y2V0 281 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 DUOX1Q9NRD9 1551 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 MYH3P11055 1940 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 RBAK-RBAKDNI3L0D1 243 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 PPIP5K2O43314 1243 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 FGRP09769 529 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 TARSP26639 723 aaKnown RBP12.22□□□□□ -0.45
LDLR-208ENST00000558518 CRYMQ14894 314 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 TAOK1Q7L7X3 1001 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 SLC30A5Q8TAD4 765 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 FAM84AQ96KN4 292 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 TGS1Q96RS0 853 aaKnown RBP12.22□□□□□ -0.45
LDLR-208ENST00000558518 LZTS2Q9BRK4 669 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 HOMER3Q9NSC5 361 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 KIF13AQ9H1H9 1805 aa12.22□□□□□ -0.45
LDLR-208ENST00000558518 GOLGA8IPA6NC78 632 aa12.21□□□□□ -0.45
LDLR-208ENST00000558518 GOLGA8JA6NMD2 632 aa12.21□□□□□ -0.45
LDLR-208ENST00000558518 LDHCP07864 332 aa12.21□□□□□ -0.45
LDLR-208ENST00000558518 RPL13P26373 211 aaKnown RBP12.21□□□□□ -0.45
LDLR-208ENST00000558518 FXR2P51116 673 aaKnown RBP eCLIP12.21□□□□□ -0.451e-6■□□□□ 10.3
LDLR-208ENST00000558518 ZNF131P52739 623 aa12.21□□□□□ -0.45
LDLR-208ENST00000558518 WLSQ5T9L3 541 aa12.21□□□□□ -0.45
LDLR-208ENST00000558518 CATSPER3Q86XQ3 398 aa12.21□□□□□ -0.45
LDLR-208ENST00000558518 PARD3BQ8TEW8 1205 aa12.21□□□□□ -0.45
LDLR-208ENST00000558518 EDEM3Q9BZQ6 932 aa12.21□□□□□ -0.45
LDLR-208ENST00000558518 ALG13Q9NP73 1137 aaKnown RBP12.21□□□□□ -0.45
LDLR-208ENST00000558518 KLHL14Q9P2G3 628 aa12.21□□□□□ -0.45
LDLR-208ENST00000558518 USTQ9Y2C2 406 aa12.21□□□□□ -0.45
LDLR-208ENST00000558518 TISP43B9A030 160 aa12.21□□□□□ -0.46
LDLR-208ENST00000558518 CLDN3O15551 220 aa12.21□□□□□ -0.46
LDLR-208ENST00000558518 PDE6CP51160 858 aa12.21□□□□□ -0.46
LDLR-208ENST00000558518 EIF3BP55884 814 aaKnown RBP12.21□□□□□ -0.46
LDLR-208ENST00000558518 CCDC6Q16204 474 aa12.21□□□□□ -0.46
LDLR-208ENST00000558518 BZW1Q7L1Q6 419 aaKnown RBP12.21□□□□□ -0.46
LDLR-208ENST00000558518 GSTA5Q7RTV2 222 aa12.21□□□□□ -0.46
LDLR-208ENST00000558518 PPM1KQ8N3J5 372 aa12.21□□□□□ -0.46
LDLR-208ENST00000558518 CCDC127Q96BQ5 260 aa12.21□□□□□ -0.46
LDLR-208ENST00000558518 FAXDC2Q96IV6 333 aa12.21□□□□□ -0.46
LDLR-208ENST00000558518 USP15Q9Y4E8 981 aaPredicted RBP12.21□□□□□ -0.46
LDLR-208ENST00000558518 GNPATO15228 680 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 MGRN1O60291 552 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 HIP1RO75146 1068 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 ADCY8P40145 1251 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 GTF2IP78347 998 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 ZCWPW2Q504Y3 356 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 ARSHQ5FYA8 562 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 ARMC9Q7Z3E5 817 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 UBL4BQ8N7F7 174 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 JMJD4Q9H9V9 463 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 NKIRAS1Q9NYS0 192 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 FOXN3O00409 490 aaPredicted RBP12.2□□□□□ -0.46
LDLR-208ENST00000558518 COMTP21964 271 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 GCLMP48507 274 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 MAPK7Q13164 816 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 C6orf118Q5T5N4 469 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 SPDYE1Q8NFV5 336 aaPredicted RBP12.2□□□□□ -0.46
LDLR-208ENST00000558518 ATP8B4Q8TF62 1192 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 RFFLQ8WZ73 363 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 CALR3Q96L12 384 aaKnown RBP12.2□□□□□ -0.46
LDLR-208ENST00000558518 A1CFQ9NQ94 594 aaKnown RBP12.2□□□□□ -0.46
LDLR-208ENST00000558518 KCNQ5Q9NR82 932 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 SUCLA2Q9P2R7 463 aaPredicted RBP12.2□□□□□ -0.46
LDLR-208ENST00000558518 HAO1Q9UJM8 370 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 TMEM59LQ9UK28 342 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 BZW2Q9Y6E2 419 aaKnown RBP12.2□□□□□ -0.46
LDLR-208ENST00000558518 SMIM24O75264 130 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 AP1G2O75843 785 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 FERP16591 822 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 RAD23BP54727 409 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 NCALDP61601 193 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms