RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 TMEM169Q96HH4 297 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 TMEM87BQ96K49 555 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 VN1R3Q9BXE9 311 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 CYP26B1Q9NR63 512 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 AKT3Q9Y243 479 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 USTQ9Y2C2 406 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 MAFBQ9Y5Q3 323 aaPredicted RBP9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 SLC12A7Q9Y666 1083 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 VWA8A3KMH1 1905 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 CHD8Q9HCK8 2581 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 NOTCH4Q99466 2003 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 A0A0U1RQF3 1178 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 IPO5O00410 1097 aaKnown RBP9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 B4GALT3O60512 393 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 ZC3H11AO75152 810 aaKnown RBP eCLIP9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 FOSP01100 380 aaPredicted RBP9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 CTSAP10619 480 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 DARSP14868 501 aaKnown RBP9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 ZSCAN20P17040 1043 aaPredicted RBP9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 EIF4BP23588 611 aaKnown RBP9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 ZNF76P36508 570 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 GPC3P51654 580 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 AP3B2Q13367 1082 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 ATAT1Q5SQI0 421 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 EFCAB12Q6NXP0 572 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 SGMS1Q86VZ5 419 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 SIX5Q8N196 739 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 TMTC2Q8N394 836 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 PLCD3Q8N3E9 789 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 DTWD2Q8NBA8 298 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 CRYGNQ8WXF5 182 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 MAP7D2Q96T17 732 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 MRPL9Q9BYD2 267 aaKnown RBP9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 GABBR1Q9UBS5 961 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 DUSP12Q9UNI6 340 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 IRAK3Q9Y616 596 aa9.26□□□□□ -0.93
CCDC88C-214ENST00000557507 SMCO2A6NFE2 343 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 MEIS3P2A8K0S8 358 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 SLC27A2O14975 620 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 MAGEB2O15479 319 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 NARSO43776 548 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 ZNF862O60290 1169 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 N4BP1O75113 896 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 CSDE1O75534 798 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 ALDH7A1P49419 539 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 DRP2Q13474 957 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 TDGQ13569 410 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 PTPN14Q15678 1187 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 UGCGQ16739 394 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 LONRF3Q496Y0 759 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 JAKMIP3Q5VZ66 844 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 ZNF746Q6NUN9 644 aaPredicted RBP9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 APOA5Q6Q788 366 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 CCDC149Q6ZUS6 474 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 GPR149Q86SP6 731 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 CABP7Q86V35 215 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 LPPQ93052 612 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 RMDN1Q96DB5 314 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 IGSF21Q96ID5 467 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 SCLT1Q96NL6 688 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 ZNF577Q9BSK1 485 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 LSG1Q9H089 658 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 NRDE2Q9H7Z3 1164 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 SFXN1Q9H9B4 322 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 KCNK12Q9HB15 430 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 BARHL2Q9NY43 387 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 CEP131Q9UPN4 1083 aa9.25□□□□□ -0.93
CCDC88C-214ENST00000557507 CNOT1A5YKK6 2376 aaKnown RBP9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 KRBA1A5PL33 1030 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 OATP04181 439 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 PSAPP07602 524 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 CYP3A4P08684 503 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 PHKA2P46019 1235 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 SLC11A1P49279 550 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 POLGP54098 1239 aaPredicted RBP9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 PRKCEQ02156 737 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 OTOP3Q7RTS5 596 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 DDX53Q86TM3 631 aaKnown RBP9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 TEX2Q8IWB9 1127 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 SMAP1Q8IYB5 467 aaPredicted RBP9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 NLRP7Q8WX94 980 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 LENG9Q96B70 501 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 ACSF2Q96CM8 615 aaPredicted RBP9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 FAM167AQ96KS9 214 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 TCEANC2Q96MN5 208 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 RTP3Q9BQQ7 232 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 TBC1D13Q9NVG8 400 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 DNAJB4Q9UDY4 337 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 FBXL21Q9UKT6 434 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 BRPF3Q9ULD4 1205 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 INPP5FQ9Y2H2 1132 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 PCDHA10Q9Y5I2 948 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 R4GN57 208 aa9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 V9GY48 417 aaPredicted RBP9.24□□□□□ -0.93
CCDC88C-214ENST00000557507 F5P12259 2224 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 hCG_1984214I3L0E3 225 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 SSBP05455 408 aaKnown RBP eCLIP9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 GALTP07902 379 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 CFHP08603 1231 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 CNPP09543 421 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms