RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 BCAR1P56945 870 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 TRDNQ13061 729 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 BMS1Q14692 1282 aaKnown RBP10.59□□□□□ -0.71
SYNE2-224ENST00000557024 WTAPQ15007 396 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 BMP2KLQ5H9B9 411 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 TYW1BQ6NUM6 668 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 ZC3H14Q6PJT7 736 aaKnown RBP10.59□□□□□ -0.71
SYNE2-224ENST00000557024 CASC1Q6TDU7 716 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 CATIPQ7Z7H3 387 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 GPR149Q86SP6 731 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 TMEM173Q86WV6 379 aaPredicted RBP10.59□□□□□ -0.71
SYNE2-224ENST00000557024 ECHDC2Q86YB7 292 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 HELQQ8TDG4 1101 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 SLC22A17Q8WUG5 538 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 RSAD2Q8WXG1 361 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 TMEM169Q96HH4 297 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 MYL10Q9BUA6 226 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 SPZ1Q9BXG8 430 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 ZBP1Q9H171 429 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 TBC1D17Q9HA65 648 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 NPDC1Q9NQX5 325 aaPredicted RBP10.59□□□□□ -0.71
SYNE2-224ENST00000557024 CA14Q9ULX7 337 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 PCDHA6Q9UN73 950 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 PCDHA8Q9Y5H6 950 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 CEP250Q9BV73 2442 aa10.59□□□□□ -0.71
SYNE2-224ENST00000557024 ACACBO00763 2458 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 FNDC1Q4ZHG4 1894 aaPredicted RBP10.58□□□□□ -0.72
SYNE2-224ENST00000557024 ZBTB42B2RXF5 422 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 GPR32O75388 356 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 CCNE2O96020 404 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 DCNP07585 359 aaKnown RBP10.58□□□□□ -0.72
SYNE2-224ENST00000557024 SP9P0CG40 484 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 GSPT1P15170 499 aaKnown RBP10.58□□□□□ -0.72
SYNE2-224ENST00000557024 SLC26A2P50443 739 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 ITGB3BPQ13352 177 aaPredicted RBP10.58□□□□□ -0.72
SYNE2-224ENST00000557024 ARSIQ5FYB1 569 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 PARP9Q8IXQ6 854 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 METTL13Q8N6R0 699 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 MXRA8Q9BRK3 442 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 IL25Q9H293 177 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 SFXN1Q9H9B4 322 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 TPRP12270 2363 aaKnown RBP10.58□□□□□ -0.72
SYNE2-224ENST00000557024 NFASCO94856 1347 aa10.58□□□□□ -0.72
SYNE2-224ENST00000557024 KAT6AQ92794 2004 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 COL1A2P08123 1366 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 hCG_1642624A0A1W2PR95 340 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 DDX39AO00148 427 aaKnown RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 HIP1O00291 1037 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 N4BP1O75113 896 aaKnown RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 ZC3H11AO75152 810 aaKnown RBP eCLIP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 ATG7O95352 703 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 PLEKHA8P1O95397 391 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 C22orf31O95567 290 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 CTSAP10619 480 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 HOXB3P14651 431 aaPredicted RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 ZSCAN20P17040 1043 aaPredicted RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 TBC1D8BQ0IIM8 1120 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 SART3Q15020 963 aaKnown RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 LETM2Q2VYF4 491 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 ZNF484Q5JVG2 852 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 FAM160B1Q5W0V3 765 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 PDXDC2PQ6P474 469 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 TRMT1LQ7Z2T5 733 aaKnown RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 CCDC60Q8IWA6 550 aaPredicted RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 CMTR1Q8N1G2 835 aaKnown RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 ZNF710Q8N1W2 664 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 CTCFLQ8NI51 663 aaPredicted RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 BCL7CQ8WUZ0 217 aaPredicted RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 ZNF668Q96K58 619 aaPredicted RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 FAM117AQ9C073 453 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 AGO4Q9HCK5 861 aaKnown RBP10.57□□□□□ -0.72
SYNE2-224ENST00000557024 IGSF9Q9P2J2 1179 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 WNT16Q9UBV4 365 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 IRAK3Q9Y616 596 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 TAF6LQ9Y6J9 622 aa10.57□□□□□ -0.72
SYNE2-224ENST00000557024 IGKV6D-21A0A0A0MT36 114 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 CDC45O75419 566 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 KIF5BP33176 963 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 CLCN3P51790 818 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 POLGP54098 1239 aaPredicted RBP10.56□□□□□ -0.72
SYNE2-224ENST00000557024 NLRP11P59045 1033 aaKnown RBP10.56□□□□□ -0.72
SYNE2-224ENST00000557024 GIT2Q14161 759 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 AMHR2Q16671 573 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 ABHD15Q6UXT9 468 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 RALYLQ86SE5 291 aaKnown RBP10.56□□□□□ -0.72
SYNE2-224ENST00000557024 C1orf210Q8IVY1 113 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 CKAP2LQ8IYA6 745 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 ZNF654Q8IZM8 581 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 SRBD1Q8N5C6 995 aaKnown RBP10.56□□□□□ -0.72
SYNE2-224ENST00000557024 ZNF454Q8N9F8 522 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 SUMF1Q8NBK3 374 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 RUFY2Q8WXA3 655 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 PGBD1Q96JS3 809 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 MRPL9Q9BYD2 267 aaKnown RBP10.56□□□□□ -0.72
SYNE2-224ENST00000557024 ZNF302Q9NR11 478 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 SIT1Q9Y3P8 196 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 GPR179Q6PRD1 2367 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 BAZ2BQ9UIF8 2168 aaKnown RBP10.56□□□□□ -0.72
SYNE2-224ENST00000557024 OTOGLQ3ZCN5 2332 aa10.56□□□□□ -0.72
SYNE2-224ENST00000557024 MYO10Q9HD67 2058 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms