RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 MTERF2Q49AM1 385 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 CACNA2D3Q8IZS8 1091 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 SLC35C1Q96A29 364 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 PPP1R16BQ96T49 567 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 RNF14Q9UBS8 474 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 FAM198AQ9UFP1 575 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 SEPT9Q9UHD8 586 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 DISP2A7MBM2 1401 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 A0A087WUV0 522 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 SLC12A3P55017 1021 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 ACTN3Q08043 901 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 ZNF365Q70YC5 407 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 RBM46Q8TBY0 533 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 JDP2Q8WYK2 163 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 SAMD15Q9P1V8 674 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 STK38LQ9Y2H1 464 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 CLTAP09496 248 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 EDRF1Q3B7T1 1238 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 MEI1Q5TIA1 1274 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 ARHGEF26Q96DR7 871 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 CCT8L2Q96SF2 557 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 UNC45AQ9H3U1 944 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 SYNCQ9H7C4 482 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 DNAJC18Q9H819 358 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 TOPORSQ9NS56 1045 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 NYAP2Q9P242 653 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 AJAP1Q9UKB5 411 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 CICQ96RK0 1608 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 PPP1R37O75864 691 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 CD58P19256 250 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 FLT3P36888 993 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 PDE6CP51160 858 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 VAMP7P51809 220 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 DLG4P78352 724 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 TRAF1Q13077 416 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 NLRP14Q86W24 1093 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 EFCAB13Q8IY85 973 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 AZI2Q9H6S1 392 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 AGPAT3Q9NRZ7 376 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 DBR1Q9UK59 544 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 MYH7P12883 1935 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 LRP6O75581 1613 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 FRMD3A2A2Y4 597 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 CD19P15391 556 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 MTMR1Q13613 665 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 SEZ6Q53EL9 994 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 WDR44Q5JSH3 913 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 HAUS6Q7Z4H7 955 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 GIMAP7Q8NHV1 300 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 SPIRE2Q8WWL2 714 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 TCP11Q8WWU5 503 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 DHX38Q92620 1227 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 C18orf8Q96DM3 657 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 ELAC2Q9BQ52 826 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 FAM213AQ9BRX8 229 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 TACO1Q9BSH4 297 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 EDEM3Q9BZQ6 932 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 KMT5AQ9NQR1 393 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 INTS9Q9NV88 658 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 ANAPC7Q9UJX3 599 aa13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 TTC7AQ9ULT0 858 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-211ENST00000556726 ZNF233A6NK53 670 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 NFIBO00712 420 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 SPATA31C1P0DKV0 1188 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 MAPK4P31152 587 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 CDK17Q00537 523 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 ORC2Q13416 577 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 MTMR3Q13615 1198 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 GLE1Q53GS7 698 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 SGO2Q562F6 1265 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 HHIPL2Q6UWX4 724 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 PALB2Q86YC2 1186 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 RMDN3Q96TC7 470 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 JPH2Q9BR39 696 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 ALG6Q9Y672 507 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 GAKO14976 1311 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 SMARCA1P28370 1054 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 CETN2P41208 172 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 DYNLT1P63172 113 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 DAB2IPQ5VWQ8 1189 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 XXYLT1Q8NBI6 393 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 RFFLQ8WZ73 363 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 PLVAPQ9BX97 442 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 KCTD10Q9H3F6 313 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 APEX2Q9UBZ4 518 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 NUP188Q5SRE5 1749 aa13.1□□□□□ -0.31
CCDC88C-211ENST00000556726 DENND3A2RUS2 1198 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 SLITRK3O94933 977 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 KRT19P08727 400 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 LIG4P49917 911 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 GABPAQ06546 454 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 GKAP1Q5VSY0 366 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 HOOK3Q86VS8 718 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 NT5C1BQ96P26 610 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 ACCSQ96QU6 501 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 NR2E1Q9Y466 385 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 LAMB4A4D0S4 1761 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 SNED1Q8TER0 1413 aa13.09□□□□□ -0.31
CCDC88C-211ENST00000556726 POC1B-GALNT4F8VUJ3 575 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms