RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 SPDYE6P0CI01 402 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 NR1D1P20393 614 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 EIF2B5Q13144 721 aaKnown RBP11.44□□□□□ -0.58
ACTN1-216ENST00000556083 DUOXA2Q1HG44 320 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 ZNF568Q3ZCX4 644 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 OSBPL5Q9H0X9 879 aaPredicted RBP11.44□□□□□ -0.58
ACTN1-216ENST00000556083 PIH1D3Q9NQM4 214 aaKnown RBP11.44□□□□□ -0.58
ACTN1-216ENST00000556083 SCOCQ9UIL1 159 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 PDS5AQ29RF7 1337 aaKnown RBP11.43□□□□□ -0.58
ACTN1-216ENST00000556083 SPATA31A6Q5VVP1 1343 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 ZNF335Q9H4Z2 1342 aaPredicted RBP11.43□□□□□ -0.58
ACTN1-216ENST00000556083 SNX2O60749 519 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 COBLO75128 1261 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 EYA4O95677 639 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 SLC25A27O95847 323 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 MUTP22033 750 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 RFC5P40937 340 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 KRT33BQ14525 404 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 KRT80Q6KB66 452 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 ASAP3Q8TDY4 903 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 OTUB1Q96FW1 271 aaPredicted RBP11.43□□□□□ -0.58
ACTN1-216ENST00000556083 FGD4Q96M96 766 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 FOPNLQ96NB1 174 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 APOBEC2Q9Y235 224 aaKnown RBP11.43□□□□□ -0.58
ACTN1-216ENST00000556083 TARBP1Q13395 1621 aaKnown RBP11.43□□□□□ -0.58
ACTN1-216ENST00000556083 MTSS1O43312 755 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 LRRN2O75325 713 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 DGAT1O75907 488 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 RPS12P25398 132 aaKnown RBP11.43□□□□□ -0.58
ACTN1-216ENST00000556083 SNX17Q15036 470 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 TMED2Q15363 201 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 BBS9Q3SYG4 887 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 FAF2Q96CS3 445 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 SPDL1Q96EA4 605 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 IFT43Q96FT9 208 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 KLHL8Q9P2G9 620 aaPredicted RBP11.43□□□□□ -0.58
ACTN1-216ENST00000556083 CRB1P82279 1406 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 CLIC2O15247 247 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 RAD17O75943 681 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 ERCC3P19447 782 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 MAP3K10Q02779 954 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 SFSWAPQ12872 951 aaKnown RBP11.43□□□□□ -0.58
ACTN1-216ENST00000556083 MCUQ8NE86 351 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 SLC16A10Q8TF71 515 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 ALKBH8Q96BT7 664 aaKnown RBP11.43□□□□□ -0.58
ACTN1-216ENST00000556083 ASPSCR1Q9BZE9 553 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 PDE11AQ9HCR9 933 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 DCP1AQ9NPI6 582 aaPredicted RBP11.43□□□□□ -0.58
ACTN1-216ENST00000556083 NYAP2Q9P242 653 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 UVRAGQ9P2Y5 699 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 TEKT2Q9UIF3 430 aa11.43□□□□□ -0.58
ACTN1-216ENST00000556083 HNRNPRO43390 633 aaKnown RBP11.42□□□□□ -0.58
ACTN1-216ENST00000556083 HSPA4LO95757 839 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 SLC16A2P36021 539 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 VAMP7P51809 220 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 HDLBPQ00341 1268 aaKnown RBP11.42□□□□□ -0.58
ACTN1-216ENST00000556083 NR5A1Q13285 461 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 ATP11CQ8NB49 1132 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 CATSPER1Q8NEC5 780 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 GDAP1Q8TB36 358 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 CHMP6Q96FZ7 201 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 TRAIPQ9BWF2 469 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 FSD1LQ9BXM9 530 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 SLC38A7Q9NVC3 462 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 TULP4Q9NRJ4 1543 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 GOLGA8IPA6NC78 632 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 SAT1P21673 171 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 CDC27P30260 824 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 ATP1A2P50993 1020 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 ABCE1P61221 599 aaKnown RBP11.42□□□□□ -0.58
ACTN1-216ENST00000556083 MED21Q13503 144 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 SNX1Q13596 522 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 XKR3Q5GH77 459 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 STRIP1Q5VSL9 837 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 CYP4F22Q6NT55 531 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 FRA10AC1Q70Z53 315 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 BRINP3Q76B58 766 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 GPD1LQ8N335 351 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 OR9Q1Q8NGQ5 310 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 NLRP4Q96MN2 994 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 NGRNQ9NPE2 291 aaKnown RBP11.42□□□□□ -0.58
ACTN1-216ENST00000556083 PCDHB6Q9Y5E3 794 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 DENND3A2RUS2 1198 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 CARNS1A5YM72 827 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 SPECC1L-ADORA2AF8WAN1 911 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 RGL2O15211 777 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 GRIN3BO60391 1043 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 CCDC22O60826 627 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 CLTAP09496 248 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 MCAMP43121 646 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 HSD17B4P51659 736 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 NNTQ13423 1086 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 PTK2BQ14289 1009 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 MYLK4Q86YV6 388 aaPredicted RBP11.42□□□□□ -0.58
ACTN1-216ENST00000556083 SYT2Q8N9I0 419 aaPredicted RBP11.42□□□□□ -0.58
ACTN1-216ENST00000556083 ZBED2Q9BTP6 218 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 ABT1Q9ULW3 272 aaKnown RBP11.42□□□□□ -0.58
ACTN1-216ENST00000556083 PTPN22Q9Y2R2 807 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 SYNJ2BP-COX16A0A087WUM0 186 aa11.42□□□□□ -0.58
ACTN1-216ENST00000556083 TARSL2A2RTX5 802 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms