RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SMAD3P84022 425 aaKnown RBP5.7□□□□□ -1.5
SCFD1-216ENST00000555550 BRAPQ7Z569 592 aa5.7□□□□□ -1.5
SCFD1-216ENST00000555550 GSTCDQ8NEC7 633 aa5.7□□□□□ -1.5
SCFD1-216ENST00000555550 PROKR1Q8TCW9 393 aa5.7□□□□□ -1.5
SCFD1-216ENST00000555550 GFM2Q969S9 779 aaKnown RBP5.7□□□□□ -1.5
SCFD1-216ENST00000555550 FOXRED1Q96CU9 486 aaPredicted RBP5.7□□□□□ -1.5
SCFD1-216ENST00000555550 IL23AQ9NPF7 189 aa5.7□□□□□ -1.5
SCFD1-216ENST00000555550 PTGFRNQ9P2B2 879 aa5.7□□□□□ -1.5
SCFD1-216ENST00000555550 POLR2AP24928 1970 aaKnown RBP5.69□□□□□ -1.5
SCFD1-216ENST00000555550 COL4A3Q01955 1670 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 RHOBTB3O94955 611 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 FBLP22087 321 aaKnown RBP5.69□□□□□ -1.5
SCFD1-216ENST00000555550 SDHAP31040 664 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 RGS3P49796 1198 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 ALDH6A1Q02252 535 aaKnown RBP5.69□□□□□ -1.5
SCFD1-216ENST00000555550 PTPAQ15257 358 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 TRIM61Q5EBN2 209 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 C1QL3Q5VWW1 255 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 RHOUQ7L0Q8 258 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 RTN4RL1Q86UN2 441 aaPredicted RBP5.69□□□□□ -1.5
SCFD1-216ENST00000555550 SYNE4Q8N205 404 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 JMYQ8N9B5 988 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 LENG9Q96B70 501 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 NCOA5Q9HCD5 579 aaKnown RBP5.69□□□□□ -1.5
SCFD1-216ENST00000555550 NCDNQ9UBB6 729 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 RCAN3Q9UKA8 241 aa5.69□□□□□ -1.5
SCFD1-216ENST00000555550 SLC12A8A0AV02 714 aa5.68□□□□□ -1.5
SCFD1-216ENST00000555550 MFAP3LO75121 409 aa5.68□□□□□ -1.5
SCFD1-216ENST00000555550 MAFO75444 373 aaPredicted RBP5.68□□□□□ -1.5
SCFD1-216ENST00000555550 RAPGEF3O95398 923 aa5.68□□□□□ -1.5
SCFD1-216ENST00000555550 ATXN1P54253 815 aaKnown RBP5.68□□□□□ -1.5
SCFD1-216ENST00000555550 CCDC144BQ3MJ40 725 aa5.68□□□□□ -1.5
SCFD1-216ENST00000555550 OVCH1Q7RTY7 1134 aa5.68□□□□□ -1.5
SCFD1-216ENST00000555550 FGD2Q7Z6J4 655 aa5.68□□□□□ -1.5
SCFD1-216ENST00000555550 ZNF764Q96H86 408 aaPredicted RBP5.68□□□□□ -1.5
SCFD1-216ENST00000555550 CELF4Q9BZC1 486 aaKnown RBP5.68□□□□□ -1.5
SCFD1-216ENST00000555550 FZD1Q9UP38 647 aa5.68□□□□□ -1.5
SCFD1-216ENST00000555550 TCRBV16S1A1N1A0A5B0 115 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 GOLGA6L6A8MZA4 724 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 PLD2O14939 933 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 HIP1RO75146 1068 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 TOX4O94842 621 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 ABHD16AO95870 558 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 PTTG1IPP53801 180 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 LY6G5CQ5SRR4 150 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 KRT40Q6A162 431 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 C2orf69Q8N8R5 385 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 IGSF22Q8N9C0 903 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 PLA2G15Q8NCC3 412 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 SH3TC2Q8TF17 1288 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 NKD2Q969F2 451 aaPredicted RBP5.67□□□□□ -1.5
SCFD1-216ENST00000555550 SCLYQ96I15 445 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 ZNF512Q96ME7 567 aaPredicted RBP5.67□□□□□ -1.5
SCFD1-216ENST00000555550 SORCS3Q9UPU3 1222 aa5.67□□□□□ -1.5
SCFD1-216ENST00000555550 GRXCR1A8MXD5 290 aa5.66□□□□□ -1.5
SCFD1-216ENST00000555550 STC2O76061 302 aa5.66□□□□□ -1.5
SCFD1-216ENST00000555550 ITGB1P05556 798 aa5.66□□□□□ -1.5
SCFD1-216ENST00000555550 SLC6A3Q01959 620 aa5.66□□□□□ -1.5
SCFD1-216ENST00000555550 DGKDQ16760 1214 aa5.66□□□□□ -1.5
SCFD1-216ENST00000555550 LRCH2Q5VUJ6 765 aa5.66□□□□□ -1.5
SCFD1-216ENST00000555550 DDX53Q86TM3 631 aaKnown RBP5.66□□□□□ -1.5
SCFD1-216ENST00000555550 CPT1CQ8TCG5 803 aa5.66□□□□□ -1.5
SCFD1-216ENST00000555550 FOXB1Q99853 325 aa5.66□□□□□ -1.5
SCFD1-216ENST00000555550 GRID2IPA4D2P6 1211 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 ZAR1LA6NP61 321 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 OPA1O60313 960 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 KRT37O76014 449 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 NPTXRO95502 500 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 ZBTB48P10074 688 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-216ENST00000555550 HK1P19367 917 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 C21orf58P58505 322 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 IRF9Q00978 393 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 GAGE13Q4V321 117 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 TMEM177Q53S58 311 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 KCNV1Q6PIU1 500 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 OLFML1Q6UWY5 402 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 HTR3DQ70Z44 454 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 CLEC14AQ86T13 490 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 CXorf67Q86X51 503 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-216ENST00000555550 MDGA1Q8NFP4 955 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 OR5AN1Q8NGI8 311 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 ARL8AQ96BM9 186 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 BBC3Q96PG8 261 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-216ENST00000555550 SYNPO2LQ9H987 977 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 TRIM39Q9HCM9 518 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 DNAI1Q9UI46 699 aa5.65□□□□□ -1.5
SCFD1-216ENST00000555550 B4E1Z4 1266 aa5.64□□□□□ -1.51
SCFD1-216ENST00000555550 KIAA0355O15063 1070 aa5.64□□□□□ -1.51
SCFD1-216ENST00000555550 KCNQ2O43526 872 aa5.64□□□□□ -1.51
SCFD1-216ENST00000555550 ASMTLO95671 621 aa5.64□□□□□ -1.51
SCFD1-216ENST00000555550 VSIG10L2P0DP72 767 aa5.64□□□□□ -1.51
SCFD1-216ENST00000555550 HNRNPLP14866 589 aaKnown RBP eCLIP5.64□□□□□ -1.51
SCFD1-216ENST00000555550 ZNF37AP17032 561 aaPredicted RBP5.64□□□□□ -1.51
SCFD1-216ENST00000555550 KCNA6P17658 529 aa5.64□□□□□ -1.51
SCFD1-216ENST00000555550 IGFALSP35858 605 aa5.64□□□□□ -1.51
SCFD1-216ENST00000555550 SQSTM1Q13501 440 aa5.64□□□□□ -1.51
SCFD1-216ENST00000555550 FNDC3BQ53EP0 1204 aaKnown RBP5.64□□□□□ -1.51
SCFD1-216ENST00000555550 ZKSCAN2Q63HK3 967 aa5.64□□□□□ -1.51
SCFD1-216ENST00000555550 MFSD5Q6N075 450 aa5.64□□□□□ -1.51
SCFD1-216ENST00000555550 ABHD17CQ6PCB6 329 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms