RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ASIC1P78348 528 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 MDM2Q00987 491 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-209ENST00000553949 CAPSQ13938 189 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 TFDP1Q14186 410 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 POSTNQ15063 836 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 PPP2R5AQ15172 486 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 ZNF410Q86VK4 478 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 ELOA2Q8IYF1 753 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-209ENST00000553949 RNF149Q8NC42 400 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 NLRP7Q8WX94 980 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 IFT74Q96LB3 600 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 SCLT1Q96NL6 688 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 WNT8AQ9H1J5 351 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 ZHX3Q9H4I2 956 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 C17orf75Q9HAS0 396 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 HOOK1Q9UJC3 728 aaKnown RBP13.54□□□□□ -0.24
SHMT2-209ENST00000553949 GINS2Q9Y248 185 aa13.54□□□□□ -0.24
SHMT2-209ENST00000553949 A0A087WZ62 844 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 LRRIQ4A6NIV6 560 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 RAG1P15918 1043 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 GAP43P17677 238 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 NAMPTP43490 491 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 NPTX2P47972 431 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 CCL23P55773 120 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 PEX3P56589 373 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 DPYDQ12882 1025 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 DMP1Q13316 513 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-209ENST00000553949 PNOCQ13519 176 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 CCDC65Q8IXS2 484 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 MYCT1Q8N699 235 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 SPIRE2Q8WWL2 714 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 OSMRQ99650 979 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 FDXACB1Q9BRP7 624 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-209ENST00000553949 CDHR5Q9HBB8 845 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 IFT122Q9HBG6 1241 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 PANK4Q9NVE7 773 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 LARSQ9P2J5 1176 aaKnown RBP13.53□□□□□ -0.24
SHMT2-209ENST00000553949 KCNG1Q9UIX4 513 aa13.53□□□□□ -0.24
SHMT2-209ENST00000553949 LOXHD1Q8IVV2 1947 aa13.52□□□□□ -0.24
SHMT2-209ENST00000553949 KAT6AQ92794 2004 aa13.52□□□□□ -0.24
SHMT2-209ENST00000553949 PVALEFA0A1B0GWK0 134 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 CCDC169A6NNP5 214 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 PTMSP20962 102 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 EIF4BP23588 611 aaKnown RBP13.52□□□□□ -0.25
SHMT2-209ENST00000553949 PHKA2P46019 1235 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 PTENP60484 403 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 POU5F1BQ06416 359 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 MBTPS1Q14703 1052 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 HERC4Q5GLZ8 1057 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-209ENST00000553949 ODR4Q5SWX8 454 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 CDCA2Q69YH5 1023 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-209ENST00000553949 UNC13DQ70J99 1090 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 SFR1Q86XK3 245 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 DEPTORQ8TB45 409 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 TMEM40Q8WWA1 233 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 SCLYQ96I15 445 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 NTPCRQ9BSD7 190 aaKnown RBP13.52□□□□□ -0.25
SHMT2-209ENST00000553949 KIFC3Q9BVG8 833 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 NFKBIZQ9BYH8 718 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 GCOM2Q9BZD3 368 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-209ENST00000553949 CLSTN2Q9H4D0 955 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 KMT5AQ9NQR1 393 aa13.52□□□□□ -0.25
SHMT2-209ENST00000553949 ZMYND8Q9ULU4 1186 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-209ENST00000553949 TRIP12Q14669 1992 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-209ENST00000553949 ADGRA3Q8IWK6 1321 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 SLC16A4O15374 487 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 KLRC4O43908 158 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 TRAK2O60296 914 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 NBNO60934 754 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 PARNO95453 639 aaKnown RBP13.51□□□□□ -0.25
SHMT2-209ENST00000553949 RPN1P04843 607 aaKnown RBP13.51□□□□□ -0.25
SHMT2-209ENST00000553949 DARSP14868 501 aaKnown RBP13.51□□□□□ -0.25
SHMT2-209ENST00000553949 SYN1P17600 705 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 SMTNP53814 917 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 COASYQ13057 564 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 LPIN1Q14693 890 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 GPNMBQ14956 572 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 CAMK4Q16566 473 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 FBXO47Q5MNV8 452 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 MFSD5Q6N075 450 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 SRGAP1Q7Z6B7 1085 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 IFNLR1Q8IU57 520 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-209ENST00000553949 ZBTB8OSQ8IWT0 167 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 FAM178BQ8IXR5 827 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 OSBPL7Q9BZF2 842 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 C2orf40Q9H1Z8 148 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 PCDH10Q9P2E7 1040 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 SEL1LQ9UBV2 794 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 NR2E3Q9Y5X4 410 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 SQORQ9Y6N5 450 aa13.51□□□□□ -0.25
SHMT2-209ENST00000553949 CSDE1O75534 798 aaKnown RBP13.5□□□□□ -0.25
SHMT2-209ENST00000553949 SMC2O95347 1197 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 GHRP10912 638 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 RFC2P35250 354 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 EFNA5P52803 228 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 NCKAP1LP55160 1127 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 MBTD1Q05BQ5 628 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 EHHADHQ08426 723 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 NFKBIBQ15653 356 aa13.5□□□□□ -0.25
SHMT2-209ENST00000553949 KMT5BQ4FZB7 885 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms