RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 NPTX2P47972 431 aa28.78■■■□□ 2.2
CCDC88C-205ENST00000553403 NCBP1Q09161 790 aaKnown RBP28.78■■■□□ 2.2
CCDC88C-205ENST00000553403 Q3C1V9 767 aa28.78■■■□□ 2.2
CCDC88C-205ENST00000553403 CCDC122Q5T0U0 273 aa28.78■■■□□ 2.2
CCDC88C-205ENST00000553403 TMEM161BQ8NDZ6 487 aa28.78■■■□□ 2.2
CCDC88C-205ENST00000553403 SHCBP1Q8NEM2 672 aa28.78■■■□□ 2.2
CCDC88C-205ENST00000553403 ATP6V0A4Q9HBG4 840 aa28.78■■■□□ 2.2
CCDC88C-205ENST00000553403 PNMA3Q9UL41 463 aa28.78■■■□□ 2.2
CCDC88C-205ENST00000553403 DNAJC25-GNG10A0A024R161 153 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 CTAGE9A4FU28 777 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 UCHL3P15374 230 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 MMP19Q99542 508 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 KMT5AQ9NQR1 393 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 KCNG1Q9UIX4 513 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 GUCA1BQ9UMX6 200 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 LRRC37A2A6NM11 1700 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 LOC102724159A0A0B4J2E5 919 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 ZNF263O14978 683 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 AKR1B10O60218 316 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 TLR2O60603 784 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 FMO5P49326 533 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 KCTD2Q14681 263 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 PWP2Q15269 919 aaKnown RBP28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 MAP4K3Q8IVH8 894 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 ZNF710Q8N1W2 664 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 TXLNBQ8N3L3 684 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 SIX2Q9NPC8 291 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 GCNT4Q9P109 453 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 TBX20Q9UMR3 447 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 DAAM1Q9Y4D1 1078 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 PCDHA13Q9Y5I0 950 aa28.77■■■□□ 2.2
CCDC88C-205ENST00000553403 CCDC169A6NNP5 214 aa28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 FARP2O94887 1054 aaPredicted RBP28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 OATP04181 439 aa28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 ACTN1P12814 892 aa28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 KRT13P13646 458 aa28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 ABCD1P33897 745 aa28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 APBA1Q02410 837 aa28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 BFSP1Q12934 665 aa28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 ASIC2Q16515 512 aa28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 KCNV1Q6PIU1 500 aa28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 INTS8Q75QN2 995 aaKnown RBP28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 NAPGQ99747 312 aaPredicted RBP28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 XPNPEP1Q9NQW7 623 aa28.76■■■□□ 2.19
CCDC88C-205ENST00000553403 RBAK-RBAKDNI3L0D1 243 aa28.75■■■□□ 2.19
CCDC88C-205ENST00000553403 SORBS3O60504 671 aa28.75■■■□□ 2.19
CCDC88C-205ENST00000553403 CYP27A1Q02318 531 aa28.75■■■□□ 2.19
CCDC88C-205ENST00000553403 KIF5AQ12840 1032 aa28.75■■■□□ 2.19
CCDC88C-205ENST00000553403 RAPGEF1Q13905 1077 aa28.75■■■□□ 2.19
CCDC88C-205ENST00000553403 XXYLT1Q8NBI6 393 aa28.75■■■□□ 2.19
CCDC88C-205ENST00000553403 FGD4Q96M96 766 aa28.75■■■□□ 2.19
CCDC88C-205ENST00000553403 TRIM10Q9UDY6 481 aa28.75■■■□□ 2.19
CCDC88C-205ENST00000553403 H0YCG3 227 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 ATP4AP20648 1035 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 MCCD1P59942 119 aaPredicted RBP28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 TDRD12Q587J7 1177 aaKnown RBP28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 BSNDQ8WZ55 320 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 NIFKQ9BYG3 293 aaKnown RBP28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 IFIH1Q9BYX4 1025 aaKnown RBP28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 R3HDMLQ9H3Y0 253 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 HSPBP1Q9NZL4 362 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 SLC45A1Q9Y2W3 748 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 GSTTP1A0A1W2PQM5 241 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 RCCD1A6NED2 376 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 ERVK-9P63128 1117 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 MNS1Q8NEH6 495 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 IFT74Q96LB3 600 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 CBWD1Q9BRT8 395 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 LACRTQ9GZZ8 138 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 FHOD1Q9Y613 1164 aa28.74■■■□□ 2.19
CCDC88C-205ENST00000553403 DENND3A2RUS2 1198 aa28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 FKBP1BP68106 108 aa28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 RBM10P98175 930 aaKnown RBP28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 MTERF2Q49AM1 385 aa28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 FAM160B1Q5W0V3 765 aa28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 MAP1SQ66K74 1059 aaPredicted RBP28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 METTL7BQ6UX53 244 aa28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 MTERF4Q7Z6M4 381 aaKnown RBP28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 MORC4Q8TE76 937 aa28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 KCNN1Q92952 543 aa28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 SPAG5Q96R06 1193 aa28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 PCIF1Q9H4Z3 704 aa28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 BZW2Q9Y6E2 419 aaKnown RBP28.73■■■□□ 2.19
CCDC88C-205ENST00000553403 N4BP1O75113 896 aaKnown RBP28.72■■■□□ 2.19
CCDC88C-205ENST00000553403 SCP2P22307 547 aa28.72■■■□□ 2.19
CCDC88C-205ENST00000553403 AFAP1L1Q8TED9 768 aa28.72■■■□□ 2.19
CCDC88C-205ENST00000553403 CARD6Q9BX69 1037 aa28.72■■■□□ 2.19
CCDC88C-205ENST00000553403 CDC23Q9UJX2 597 aa28.72■■■□□ 2.19
CCDC88C-205ENST00000553403 MYH9P35579 1960 aaKnown RBP28.72■■■□□ 2.19
CCDC88C-205ENST00000553403 TISP43B9A030 160 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 P4HA2O15460 535 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 PJA2O43164 708 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 PGK2P07205 417 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 CETPP11597 493 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 MAGEA1P43355 309 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 JAM2P57087 298 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 KLHL30Q0D2K2 578 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 EMC2Q15006 297 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 SEPT1Q8WYJ6 367 aa28.71■■■□□ 2.19
CCDC88C-205ENST00000553403 POLR3FQ9H1D9 316 aaPredicted RBP28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms