RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 FAM86B1E9PN63 330 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 LRRN2O75325 713 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 IGHDP01880 384 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 SSBP05455 408 aaKnown RBP eCLIP14.67□□□□□ -0.06
VPS29-211ENST00000553128 GALTP07902 379 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 FAM86B2P0C5J1 330 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 MYBP10242 640 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 POLGP54098 1239 aaPredicted RBP14.67□□□□□ -0.06
VPS29-211ENST00000553128 TBC1D8BQ0IIM8 1120 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 BMS1Q14692 1282 aaKnown RBP14.67□□□□□ -0.06
VPS29-211ENST00000553128 WWC2Q6AWC2 1192 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 EFCAB12Q6NXP0 572 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 MIS18BP1Q6P0N0 1132 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 MAML2Q8IZL2 1156 aaPredicted RBP14.67□□□□□ -0.06
VPS29-211ENST00000553128 SLC44A3Q8N4M1 653 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 BBXQ8WY36 941 aaPredicted RBP14.67□□□□□ -0.06
VPS29-211ENST00000553128 KLHL5Q96PQ7 755 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 MRPL9Q9BYD2 267 aaKnown RBP14.67□□□□□ -0.06
VPS29-211ENST00000553128 IGSF9Q9P2J2 1179 aa14.67□□□□□ -0.06
VPS29-211ENST00000553128 MAFBQ9Y5Q3 323 aaPredicted RBP14.67□□□□□ -0.06
VPS29-211ENST00000553128 CNPP09543 421 aaKnown RBP14.66□□□□□ -0.06
VPS29-211ENST00000553128 DARSP14868 501 aaKnown RBP14.66□□□□□ -0.06
VPS29-211ENST00000553128 RFX1P22670 979 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 GBP2P32456 591 aaPredicted RBP14.66□□□□□ -0.06
VPS29-211ENST00000553128 SLC11A1P49279 550 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 GNAQP50148 359 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 GPC3P51654 580 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 GIT2Q14161 759 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 DIEXFQ68CQ4 756 aaKnown RBP14.66□□□□□ -0.06
VPS29-211ENST00000553128 C1orf210Q8IVY1 113 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 GPR152Q8TDT2 470 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 MYADMQ96S97 322 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 TBC1D13Q9NVG8 400 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 ACACBO00763 2458 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 SPTBN2O15020 2390 aa14.66□□□□□ -0.06
VPS29-211ENST00000553128 COL4A3Q01955 1670 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 IGLV3-22A0A075B6J6 115 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 SH2B2O14492 632 aaPredicted RBP14.65□□□□□ -0.06
VPS29-211ENST00000553128 PRC1O43663 620 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 LILRB3O75022 631 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 GSPT1P15170 499 aaKnown RBP14.65□□□□□ -0.06
VPS29-211ENST00000553128 KLRC2P26717 231 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 SREBF1P36956 1147 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 NFXL1Q6ZNB6 911 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 TMTC3Q6ZXV5 915 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 PPFIBP1Q86W92 1011 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 PLA2G4DQ86XP0 818 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 ZNF280BQ86YH2 543 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 FOXQ1Q9C009 403 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 GBP3Q9H0R5 595 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 RIC8AQ9NPQ8 531 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 INPP5FQ9Y2H2 1132 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 FANCMQ8IYD8 2048 aa14.65□□□□□ -0.06
VPS29-211ENST00000553128 IPO5O00410 1097 aaKnown RBP14.64□□□□□ -0.07
VPS29-211ENST00000553128 ADAMTS3O15072 1205 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 SRFP11831 508 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 ZNF76P36508 570 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 PHKA2P46019 1235 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 ATXN1P54253 815 aaKnown RBP14.64□□□□□ -0.07
VPS29-211ENST00000553128 DRP2Q13474 957 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 ZC3H14Q6PJT7 736 aaKnown RBP14.64□□□□□ -0.07
VPS29-211ENST00000553128 C15orf39Q6ZRI6 1047 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 MAP7D2Q96T17 732 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 WDR6Q9NNW5 1121 aaKnown RBP14.64□□□□□ -0.07
VPS29-211ENST00000553128 MAN1C1Q9NR34 630 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 EPS15L1Q9UBC2 864 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 GABBR1Q9UBS5 961 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 SIT1Q9Y3P8 196 aa14.64□□□□□ -0.07
VPS29-211ENST00000553128 CCDC195A0A1B0GUA6 201 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 CCDC69A6NI79 296 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 C2CD2LO14523 706 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 MAGEB2O15479 319 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 ZNF862O60290 1169 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 OFD1O75665 1012 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 RFPL2O75678 378 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 CLK2P49760 499 aaKnown RBP14.63□□□□□ -0.07
VPS29-211ENST00000553128 AFF1P51825 1210 aaKnown RBP14.63□□□□□ -0.07
VPS29-211ENST00000553128 NAPAP54920 295 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 NOMO2Q5JPE7 1267 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 PHLDB3Q6NSJ2 640 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 CASC1Q6TDU7 716 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 NIPA1Q7RTP0 329 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 SCLT1Q96NL6 688 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 LRRC2Q9BYS8 371 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 ARHGEF3Q9NR81 526 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 CLUHO75153 1309 aa14.63□□□□□ -0.07
VPS29-211ENST00000553128 DDHD2O94830 711 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 TMOD1P28289 359 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 ADCY7P51828 1080 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 TAS1R1Q7RTX1 841 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 FANCBQ8NB91 859 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 CMASQ8NFW8 434 aaPredicted RBP14.62□□□□□ -0.07
VPS29-211ENST00000553128 NLRP7Q8WX94 980 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 ZNF707Q96C28 371 aaPredicted RBP14.62□□□□□ -0.07
VPS29-211ENST00000553128 EMILIN2Q9BXX0 1053 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 DACT1Q9NYF0 836 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 CEP131Q9UPN4 1083 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 CACNA1IQ9P0X4 2223 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 CNTNAP5Q8WYK1 1306 aa14.62□□□□□ -0.07
VPS29-211ENST00000553128 SMCO2A6NFE2 343 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms