RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 LOC730098B7Z3J9 87 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 ATF7P17544 494 aaPredicted RBP12.89□□□□□ -0.35
NEK3-204ENST00000552973 SCRN1Q12765 414 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 PDE12Q6L8Q7 609 aaKnown RBP12.89□□□□□ -0.35
NEK3-204ENST00000552973 ANKRD54Q6NXT1 300 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 ZNF598Q86UK7 904 aaKnown RBP12.89□□□□□ -0.35
NEK3-204ENST00000552973 ZNF710Q8N1W2 664 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 DAGLBQ8NCG7 672 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 RDM1Q8NG50 284 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 EDAQ92838 391 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 FBXL18Q96ME1 805 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 NLRP4Q96MN2 994 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 MBOAT7Q96N66 472 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 CDCA3Q99618 268 aaPredicted RBP12.89□□□□□ -0.35
NEK3-204ENST00000552973 TM6SF1Q9BZW5 370 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 NGRNQ9NPE2 291 aaKnown RBP12.89□□□□□ -0.35
NEK3-204ENST00000552973 BMP2KQ9NSY1 1161 aaPredicted RBP12.89□□□□□ -0.35
NEK3-204ENST00000552973 DACT1Q9NYF0 836 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 CDH22Q9UJ99 828 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 LZTS1Q9Y250 596 aa12.89□□□□□ -0.35
NEK3-204ENST00000552973 CCDC194A0A1B0GVG4 234 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 MEIS3P2A8K0S8 358 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 MAFO75444 373 aaPredicted RBP12.88□□□□□ -0.35
NEK3-204ENST00000552973 EOMESO95936 686 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 DNM2P50570 870 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 NPEPPSP55786 919 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 PSMC5P62195 406 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 KCNC3Q14003 757 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 TWF2Q6IBS0 349 aaKnown RBP12.88□□□□□ -0.35
NEK3-204ENST00000552973 SYCE2Q6PIF2 218 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 ANO5Q75V66 913 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 KRT25Q7Z3Z0 450 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 SLC39A11Q8N1S5 342 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 ZNF579Q8NAF0 562 aaKnown RBP12.88□□□□□ -0.35
NEK3-204ENST00000552973 SUSD6Q92537 303 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 S1PR5Q9H228 398 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 PIN4Q9Y237 131 aaKnown RBP12.88□□□□□ -0.35
NEK3-204ENST00000552973 INPP5FQ9Y2H2 1132 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 BDP1A6H8Y1 2624 aa12.88□□□□□ -0.35
NEK3-204ENST00000552973 EPB41L2O43491 1005 aaKnown RBP12.87□□□□□ -0.35
NEK3-204ENST00000552973 MARCH6O60337 910 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 CCNT1O60563 726 aaKnown RBP12.87□□□□□ -0.35
NEK3-204ENST00000552973 CXCL14O95715 111 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 SRGAP2BP0DMP2 458 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 SFPQP23246 707 aaKnown RBP eCLIP12.87□□□□□ -0.35
NEK3-204ENST00000552973 PPM1AP35813 382 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 PHKA2P46019 1235 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 ALDH7A1P49419 539 aaKnown RBP12.87□□□□□ -0.35
NEK3-204ENST00000552973 BCAR1P56945 870 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 ZXDAP98168 799 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 GALNT17Q6IS24 598 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 MOXD1Q6UVY6 613 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 TMEM184AQ6ZMB5 413 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 TRIM67Q6ZTA4 783 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 PIK3AP1Q6ZUJ8 805 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 CATSPER4Q7RTX7 472 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 TMEM173Q86WV6 379 aaPredicted RBP12.87□□□□□ -0.35
NEK3-204ENST00000552973 MRPL43Q8N983 215 aaKnown RBP12.87□□□□□ -0.35
NEK3-204ENST00000552973 OXER1Q8TDS5 423 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 AUTS2Q8WXX7 1259 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 PBXIP1Q96AQ6 731 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 CEP170P1Q96L14 293 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 MFSD14AQ96MC6 490 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 PHF20Q9BVI0 1012 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 CYP26B1Q9NR63 512 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 CHST12Q9NRB3 414 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 WRAP73Q9P2S5 460 aaPredicted RBP12.87□□□□□ -0.35
NEK3-204ENST00000552973 VAV3Q9UKW4 847 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 TPCN1Q9ULQ1 816 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 ATG2AQ2TAZ0 1938 aa12.87□□□□□ -0.35
NEK3-204ENST00000552973 TMEM221A6NGB7 291 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 C2orf71A6NGG8 1288 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 M0R296 226 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 ZC3H11AO75152 810 aaKnown RBP eCLIP12.86□□□□□ -0.35
NEK3-204ENST00000552973 WEE2P0C1S8 567 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 SRGAP2CP0DJJ0 459 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 QARSP47897 775 aaKnown RBP12.86□□□□□ -0.35
NEK3-204ENST00000552973 CDC42EP1Q00587 391 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 SMC1AQ14683 1233 aaKnown RBP12.86□□□□□ -0.35
NEK3-204ENST00000552973 CBX2Q14781 532 aaPredicted RBP12.86□□□□□ -0.35
NEK3-204ENST00000552973 EARS2Q5JPH6 523 aaKnown RBP12.86□□□□□ -0.35
NEK3-204ENST00000552973 KANK3Q6NY19 840 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 NEK8Q86SG6 692 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 TMEM143Q96AN5 459 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 TMEM169Q96HH4 297 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 MRPL9Q9BYD2 267 aaKnown RBP12.86□□□□□ -0.35
NEK3-204ENST00000552973 INO80BQ9C086 356 aaPredicted RBP12.86□□□□□ -0.35
NEK3-204ENST00000552973 GBP3Q9H0R5 595 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 TSHZ2Q9NRE2 1034 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 FAM105AQ9NUU6 356 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 HCFC2Q9Y5Z7 792 aa12.86□□□□□ -0.35
NEK3-204ENST00000552973 KIAA1671Q9BY89 1806 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 FSD2A1L4K1 749 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 FAM205CA6NFA0 338 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 ZBTB39O15060 712 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 CLASP2O75122 1294 aaKnown RBP12.85□□□□□ -0.35
NEK3-204ENST00000552973 CDKL5O76039 1030 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 P4HBP07237 508 aaKnown RBP12.85□□□□□ -0.35
NEK3-204ENST00000552973 GALTP07902 379 aa12.85□□□□□ -0.35
NEK3-204ENST00000552973 PPP2R5CQ13362 524 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms