RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ZNF484Q5JVG2 852 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 PDXDC2PQ6P474 469 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 PLA2G4DQ86XP0 818 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 CCDC60Q8IWA6 550 aaPredicted RBP8.65□□□□□ -1.02
NEK3-201ENST00000550331 SMAP1Q8IYB5 467 aaPredicted RBP8.65□□□□□ -1.02
NEK3-201ENST00000550331 KIAA0319LQ8IZA0 1049 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 FBXL16Q8N461 479 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 CCDC12Q8WUD4 166 aaPredicted RBP8.65□□□□□ -1.02
NEK3-201ENST00000550331 BBXQ8WY36 941 aaPredicted RBP8.65□□□□□ -1.02
NEK3-201ENST00000550331 ZMYND12Q9H0C1 365 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 C6orf50Q9HD87 102 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 ERVK-5Q9HDB9 667 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 ALG13Q9NP73 1137 aaKnown RBP8.65□□□□□ -1.02
NEK3-201ENST00000550331 ZNF302Q9NR11 478 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 TBC1D22BQ9NU19 505 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 LRFN2Q9ULH4 789 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 PLXNA3P51805 1871 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 KAT6AQ92794 2004 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 RIF1Q5UIP0 2472 aaKnown RBP8.64□□□□□ -1.03
NEK3-201ENST00000550331 FSD2A1L4K1 749 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 DDX39AO00148 427 aaKnown RBP8.64□□□□□ -1.03
NEK3-201ENST00000550331 GPR182O15218 404 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 C22orf31O95567 290 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 ITGB1P05556 798 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 GNA11P29992 359 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 ADD1P35611 737 aaKnown RBP8.64□□□□□ -1.03
NEK3-201ENST00000550331 UBE3AQ05086 875 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 ADAM15Q13444 863 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 TMEM266Q2M3C6 531 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 PAN2Q504Q3 1202 aaKnown RBP8.64□□□□□ -1.03
NEK3-201ENST00000550331 JAKMIP3Q5VZ66 844 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 ZNF746Q6NUN9 644 aaPredicted RBP8.64□□□□□ -1.03
NEK3-201ENST00000550331 SWSAP1Q6NVH7 229 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 SLC24A5Q71RS6 500 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 REXO1Q8N1G1 1221 aaKnown RBP8.64□□□□□ -1.03
NEK3-201ENST00000550331 FBXL6Q8N531 539 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 KLHL23Q8NBE8 558 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 SPPL3Q8TCT6 385 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 TMEM40Q8WWA1 233 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 KCNB2Q92953 911 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 ZNF577Q9BSK1 485 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 IGFLR1Q9H665 355 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 RGS18Q9NS28 235 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 TCEAL9Q9UHQ7 104 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 CD207Q9UJ71 328 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 CEP131Q9UPN4 1083 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 GINS2Q9Y248 185 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 PCDHB7Q9Y5E2 793 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 MAFBQ9Y5Q3 323 aaPredicted RBP8.64□□□□□ -1.03
NEK3-201ENST00000550331 FAM186AA6NE01 2351 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 KIAA1671Q9BY89 1806 aa8.64□□□□□ -1.03
NEK3-201ENST00000550331 DMDP11532 3685 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 DENND3A2RUS2 1198 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 ZBTB42B2RXF5 422 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 C9IYK1 514 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 LINC01565O15544 149 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 PRPF3O43395 683 aaKnown RBP8.63□□□□□ -1.03
NEK3-201ENST00000550331 MGEA5O60502 916 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 CSPG5O95196 566 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 EYA4O95677 639 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 PSAPP07602 524 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 ATP4AP20648 1035 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 DNAJB1P25685 340 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 CIITAP33076 1130 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 GTF2F1P35269 517 aaKnown RBP eCLIP8.63□□□□□ -1.03
NEK3-201ENST00000550331 NDUFV1P49821 464 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 CRYBB1P53674 252 aaPredicted RBP8.63□□□□□ -1.03
NEK3-201ENST00000550331 CKAP2LQ8IYA6 745 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 EFHBQ8N7U6 833 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 CCDC148Q8NFR7 591 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 BICD2Q8TD16 824 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 POF1BQ8WVV4 589 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 ATOH1Q92858 354 aaPredicted RBP8.63□□□□□ -1.03
NEK3-201ENST00000550331 MSLNLQ96KJ4 702 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 FAM167AQ96KS9 214 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 ADAM2Q99965 735 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 AGXT2Q9BYV1 514 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 ELAC1Q9H777 363 aaKnown RBP8.63□□□□□ -1.03
NEK3-201ENST00000550331 TMEM161AQ9NX61 479 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 NAP1L2Q9ULW6 460 aaPredicted RBP8.63□□□□□ -1.03
NEK3-201ENST00000550331 ST3GAL5Q9UNP4 418 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 NOC2LQ9Y3T9 749 aaKnown RBP8.63□□□□□ -1.03
NEK3-201ENST00000550331 PCDHB12Q9Y5F1 795 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 PCDHA10Q9Y5I2 948 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 DOCK5Q9H7D0 1870 aa8.63□□□□□ -1.03
NEK3-201ENST00000550331 WDR64B1ANS9 1081 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 MAGEB2O15479 319 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 GPR32O75388 356 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 HSPA4P34932 840 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 GATMP50440 423 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 FAM189BP81408 668 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 ZXDAP98168 799 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 AKAP17AQ02040 695 aaKnown RBP8.62□□□□□ -1.03
NEK3-201ENST00000550331 APOBRQ0VD83 1088 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 COASYQ13057 564 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 KIZQ2M2Z5 673 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 PRR16Q569H4 304 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 PDE12Q6L8Q7 609 aaKnown RBP8.62□□□□□ -1.03
NEK3-201ENST00000550331 BLOC1S2Q6QNY1 142 aa8.62□□□□□ -1.03
NEK3-201ENST00000550331 Q6ZUG5 572 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms