RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 LPIN1Q14693 890 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 GPNMBQ14956 572 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 NAALADL2Q58DX5 795 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 PLEKHG4Q58EX7 1191 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 ARSHQ5FYA8 562 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 PRPF38BQ5VTL8 546 aaKnown RBP15.24■□□□□ 0.03
PTCH1-213ENST00000546820 CNKSR3Q6P9H4 555 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 CLEC17AQ6ZS10 378 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 ZNF365Q70YC5 407 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 KSR1Q8IVT5 923 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 TNMDQ9H2S6 317 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 GPRC5CQ9NQ84 441 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 LARSQ9P2J5 1176 aaKnown RBP15.24■□□□□ 0.03
PTCH1-213ENST00000546820 HPSEQ9Y251 543 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 PDE4DIPQ5VU43 2346 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 ARID2Q68CP9 1835 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 FAM237AA0A1B0GTK4 181 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 ABHD14A-ACY1A0A1B0GW23 586 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 LRRIQ4A6NIV6 560 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 FAM13AO94988 1023 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 SLFN14P0C7P3 912 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 SFPQP23246 707 aaKnown RBP eCLIP15.23■□□□□ 0.03
PTCH1-213ENST00000546820 GLRA2P23416 452 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 NAMPTP43490 491 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 RAD51AP2Q09MP3 1159 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 NFX1Q12986 1120 aaKnown RBP15.23■□□□□ 0.03
PTCH1-213ENST00000546820 DMP1Q13316 513 aaPredicted RBP15.23■□□□□ 0.03
PTCH1-213ENST00000546820 MBTPS1Q14703 1052 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 PCBP1Q15365 356 aaKnown RBP eCLIP15.23■□□□□ 0.03
PTCH1-213ENST00000546820 E2F4Q16254 413 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 TMEM240Q5SV17 173 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 ZBTB8OSQ8IWT0 167 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 DBF4BQ8NFT6 615 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 DEPTORQ8TB45 409 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 ASAP3Q8TDY4 903 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 ZNF668Q96K58 619 aaPredicted RBP15.23■□□□□ 0.03
PTCH1-213ENST00000546820 FTHL17Q9BXU8 183 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 NFKBIZQ9BYH8 718 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 C2orf40Q9H1Z8 148 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 KBTBD4Q9NVX7 518 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 PADI3Q9ULW8 664 aa15.23■□□□□ 0.03
PTCH1-213ENST00000546820 NOC2LQ9Y3T9 749 aaKnown RBP15.23■□□□□ 0.03
PTCH1-213ENST00000546820 CCDC169A6NNP5 214 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 GOLGA6L22H0YM25 854 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 TBCAO75347 108 aaKnown RBP15.22■□□□□ 0.03
PTCH1-213ENST00000546820 BAIAP3O94812 1187 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 CD52P31358 61 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 NDUFA8P51970 172 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 PTENP60484 403 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 GIT2Q14161 759 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 KANK3Q6NY19 840 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 C16orf59Q7L2K0 433 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 OTOP2Q7RTS6 562 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 TMEM87AQ8NBN3 555 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 LRRC15Q8TF66 581 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 DDX12PQ92771 950 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.22■□□□□ 0.03
PTCH1-213ENST00000546820 ZHX3Q9H4I2 956 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 IFT122Q9HBG6 1241 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 POLD4Q9HCU8 107 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 SERTAD1Q9UHV2 236 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 ST3GAL5Q9UNP4 418 aa15.22■□□□□ 0.03
PTCH1-213ENST00000546820 PHLPP2Q6ZVD8 1323 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 NPHP3-ACAD11A0A0J9YXS1 232 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 MYMKA6NI61 221 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 SFI1A8K8P3 1242 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 H0YCG3 227 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 PRPF40AO75400 957 aaKnown RBP15.21■□□□□ 0.03
PTCH1-213ENST00000546820 ZNF202O95125 648 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 PLS3P13797 630 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 ZSCAN20P17040 1043 aaPredicted RBP15.21■□□□□ 0.03
PTCH1-213ENST00000546820 SCP2P22307 547 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 EFNA5P52803 228 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 EPHB4P54760 987 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 PEX3P56589 373 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 CAPSQ13938 189 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 LONRF3Q496Y0 759 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 CHRDL2Q6WN34 429 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 DYMQ7RTS9 669 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 CATSPER4Q7RTX7 472 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 IFNLR1Q8IU57 520 aaPredicted RBP15.21■□□□□ 0.03
PTCH1-213ENST00000546820 MYCT1Q8N699 235 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 CNNM3Q8NE01 707 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 TMEM40Q8WWA1 233 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 HERVK_113Q902F9 699 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 REEP2Q9BRK0 252 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 NTPCRQ9BSD7 190 aaKnown RBP15.21■□□□□ 0.03
PTCH1-213ENST00000546820 AGO3Q9H9G7 860 aaKnown RBP15.21■□□□□ 0.03
PTCH1-213ENST00000546820 PARVGQ9HBI0 331 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 ERVK-5Q9HDB9 667 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 KMT5AQ9NQR1 393 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 CHST12Q9NRB3 414 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 RNF216Q9NWF9 866 aaPredicted RBP15.21■□□□□ 0.03
PTCH1-213ENST00000546820 LTBP2Q14767 1821 aa15.21■□□□□ 0.03
PTCH1-213ENST00000546820 TNRC18O15417 2968 aaPredicted RBP15.2■□□□□ 0.02
PTCH1-213ENST00000546820 ZBBXA8MT70 800 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 INO80B-WBP1J3KQ70 363 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 K7ERI5 159 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 ERLIN2O94905 339 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 IDEP14735 1019 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms