RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 MTRQ99707 1265 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.88■□□□□ 0.291e-6■■■□□ 16.1
CUX1-211ENST00000546411 TRIM51Q9BSJ1 452 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 RPAP3Q9H6T3 665 aaPredicted RBP16.88■□□□□ 0.29
CUX1-211ENST00000546411 CLTAP09496 248 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 ALDH3A1P30838 453 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 YWHABP31946 246 aaKnown RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 THOC1Q96FV9 657 aaKnown RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 CELF4Q9BZC1 486 aaKnown RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 ZNF446Q9NWS9 450 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 CYP2C19P33261 490 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 RWDD2BP57060 319 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 MAGOHP61326 146 aaKnown RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 PALM2Q8IXS6 379 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 SLC35G2Q8TBE7 412 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 RNF25Q96BH1 459 aaPredicted RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 RNPC3Q96LT9 517 aaKnown RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 TACO1Q9BSH4 297 aaKnown RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 CALN1Q9BXU9 219 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 VCPKMTQ9H867 229 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 GPRC5CQ9NQ84 441 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 TBC1D22BQ9NU19 505 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 FBXL5Q9UKA1 691 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 LRRIQ3A6PVS8 624 aaPredicted RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 H0YCG3 227 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 ZNF131P52739 623 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 KCTD2Q14681 263 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 SHROOM1Q2M3G4 852 aaPredicted RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 EDRF1Q3B7T1 1238 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 RINT1Q6NUQ1 792 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 TRAPPC11Q7Z392 1133 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 ZNF384Q8TF68 577 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 NUP85Q9BW27 656 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 TAF1DQ9H5J8 278 aaPredicted RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 SEL1LQ9UBV2 794 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 ANAPC5Q9UJX4 755 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 TTC7AQ9ULT0 858 aaPredicted RBP16.87■□□□□ 0.29
CUX1-211ENST00000546411 FAM169AQ9Y6X4 670 aa16.87■□□□□ 0.29
CUX1-211ENST00000546411 MRC1P22897 1456 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 SASH3O75995 380 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 GLE1Q53GS7 698 aaKnown RBP16.86■□□□□ 0.29
CUX1-211ENST00000546411 ANKS1AQ92625 1134 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 ANKZF1Q9H8Y5 726 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 ADAM22Q9P0K1 906 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.86■□□□□ 0.29
CUX1-211ENST00000546411 KCNG1Q9UIX4 513 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 H3BQF6 201 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 RASGRF2O14827 1237 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 AKAP3O75969 853 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 RNF8O76064 485 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 ARP10275 920 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 ACOT2P49753 483 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 KLHDC7AQ5VTJ3 777 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 GDAP1Q8TB36 358 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 C1orf54Q8WWF1 131 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 RFFLQ8WZ73 363 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 AKT3Q9Y243 479 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 PPP2R5AQ15172 486 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 SYT2Q8N9I0 419 aaPredicted RBP16.86■□□□□ 0.29
CUX1-211ENST00000546411 RNF169Q8NCN4 708 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 ELMO3Q96BJ8 720 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 DCPSQ96C86 337 aaKnown RBP16.86■□□□□ 0.29
CUX1-211ENST00000546411 MTMR8Q96EF0 704 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 ADAM33Q9BZ11 813 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 KCNH7Q9NS40 1196 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 L1RE1Q9UN81 338 aa16.86■□□□□ 0.29
CUX1-211ENST00000546411 EPHB6O15197 1021 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 RAD51CO43502 376 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 CUL1Q13616 776 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.85■□□□□ 0.29
CUX1-211ENST00000546411 ZNF564Q8TBZ8 553 aaPredicted RBP16.85■□□□□ 0.29
CUX1-211ENST00000546411 ZSCAN5CA6NGD5 496 aaPredicted RBP16.85■□□□□ 0.29
CUX1-211ENST00000546411 KRT1P04264 644 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 Q3C1V9 767 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 DNAJC24Q6P3W2 148 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 CROCCP2Q86T23 111 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 CERS5Q8N5B7 392 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 C7orf31Q8N865 590 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 GRK7Q8WTQ7 553 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 CDHR1Q96JP9 859 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 HPCAL4Q9UM19 191 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 PSMC5P62195 406 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 CCDC38Q502W7 563 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 SAMD7Q7Z3H4 446 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 HDAC7Q8WUI4 952 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 HSPBP1Q9NZL4 362 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 APEX2Q9UBZ4 518 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 SLIT3O75094 1523 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 TRIM66O15016 1216 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 ENTPD3O75355 529 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 GIT2Q14161 759 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 C2CD6Q53TS8 623 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 NSUN6Q8TEA1 469 aaKnown RBP16.85■□□□□ 0.29
CUX1-211ENST00000546411 PI4K2AQ9BTU6 479 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 TRIM7Q9C029 511 aa16.85■□□□□ 0.29
CUX1-211ENST00000546411 A0A1W2PQJ5 194 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 KCNA1Q09470 495 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 KRT39Q6A163 491 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 APOBEC3HQ6NTF7 200 aaKnown RBP16.84■□□□□ 0.29
CUX1-211ENST00000546411 RSRC2Q7L4I2 434 aaKnown RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms