RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SH2D3AQ9BRG2 576 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 ZHX3Q9H4I2 956 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 TMEM134Q9H6X4 195 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 TMEM206Q9H813 350 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 SUGCTQ9HAC7 445 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 KMT5AQ9NQR1 393 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 ARHGAP28Q9P2N2 729 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 SUCLA2Q9P2R7 463 aaPredicted RBP17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 BICDL2A1A5D9 508 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 RSPH10B2B2RC85 870 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 PPP1R37O75864 691 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 RSPH10BP0C881 870 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 COL6A1P12109 1028 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 GLRA2P23416 452 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 PHKA2P46019 1235 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 NPTX2P47972 431 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 RAD51AP2Q09MP3 1159 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 STK4Q13043 487 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 SNX17Q15036 470 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 ADSSL1Q8N142 457 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 CCDC155Q8N6L0 562 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 METTL13Q8N6R0 699 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 ZNF507Q8TCN5 953 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 TMEM174Q8WUU8 243 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 TRAPPC12Q8WVT3 735 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 VTI1AQ96AJ9 217 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 TOX2Q96NM4 488 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 FIZ1Q96SL8 496 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 STRA6Q9BX79 667 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 INO80BQ9C086 356 aaPredicted RBP17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 EXOC7Q9UPT5 735 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 GRIN2DO15399 1336 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 CDK7P50613 346 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 PEX3P56589 373 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 RBL2Q08999 1139 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 LAMTOR4Q0VGL1 99 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 MKRN4PQ13434 485 aaPredicted RBP17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 FAM47CQ5HY64 1035 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 KIAA0319LQ8IZA0 1049 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 KIAA0895Q8NCT3 520 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 DEPTORQ8TB45 409 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 PRPF31Q8WWY3 499 aaKnown RBP17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 TMEM143Q96AN5 459 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 PRIMPOLQ96LW4 560 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 TSPY26PQ9H489 355 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 GPRC5CQ9NQ84 441 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 NOD1Q9Y239 953 aa17.65■□□□□ 0.42
PRPF40A-212ENST00000545856 K7ENM7 598 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 M0QZ92 97 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 BIN1O00499 593 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 TLR3O15455 904 aaKnown RBP17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 TREHO43280 583 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 GCNT3O95395 438 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 CLCN3P51790 818 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 PTENP60484 403 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 CACNB1Q02641 598 aaPredicted RBP17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 LRRC63Q05C16 580 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 CAPSQ13938 189 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 PTGISQ16647 500 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 GDF6Q6KF10 455 aaPredicted RBP17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 ANKRD33Q7Z3H0 272 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 HAUS6Q7Z4H7 955 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 SRGAP1Q7Z6B7 1085 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 LRRC71Q8N4P6 559 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 TMEM161BQ8NDZ6 487 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 CAGE1Q8TC20 777 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 ERCC4Q92889 916 aaPredicted RBP17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 GZF1Q9H116 711 aaPredicted RBP17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 AKT3Q9Y243 479 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 SQORQ9Y6N5 450 aa17.64■□□□□ 0.41
PRPF40A-212ENST00000545856 IKBKBO14920 756 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 BMP6P22004 513 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 MNX1P50219 401 aaPredicted RBP17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 GPC3P51654 580 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 MYBPC2Q14324 1141 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 NFIL3Q16649 462 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 FAM187BQ17R55 369 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 DPCR1Q3MIW9 517 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 L1TD1Q5T7N2 865 aaKnown RBP17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 MAEAQ7L5Y9 396 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 RHPN2Q8IUC4 686 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 MAP4K3Q8IVH8 894 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 FAM200AQ8TCP9 573 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 ASAP3Q8TDY4 903 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 ACCSQ96QU6 501 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 SLC39A2Q9NP94 309 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 RWDD2AQ9UIY3 292 aa17.63■□□□□ 0.41
PRPF40A-212ENST00000545856 LRRIQ4A6NIV6 560 aa17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 CCDC169A6NNP5 214 aa17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 PPP1R3GB7ZBB8 358 aa17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 PDXKO00764 312 aa17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 KIAA0391O15091 583 aaKnown RBP17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 PARNO95453 639 aaKnown RBP17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 PIGRP01833 764 aa17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 PRKCSHP14314 528 aaPredicted RBP17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 CCNE1P24864 410 aa17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 CHMP4BP1P59074 171 aa17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 STRN3Q13033 797 aa17.62■□□□□ 0.41
PRPF40A-212ENST00000545856 PAK1Q13153 545 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms