RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 MFSD1Q9H3U5 465 aa14.53□□□□□ -0.08
USP28-212ENST00000544750 FAM217BQ9NTX9 383 aaPredicted RBP14.53□□□□□ -0.08
USP28-212ENST00000544750 RBM28Q9NW13 759 aaKnown RBP14.53□□□□□ -0.08
USP28-212ENST00000544750 GABBR1Q9UBS5 961 aa14.53□□□□□ -0.08
USP28-212ENST00000544750 DBR1Q9UK59 544 aaKnown RBP14.53□□□□□ -0.08
USP28-212ENST00000544750 V9GY48 417 aaPredicted RBP14.53□□□□□ -0.08
USP28-212ENST00000544750 OTOGLQ3ZCN5 2332 aa14.52□□□□□ -0.08
USP28-212ENST00000544750 FRYLO94915 3013 aa14.52□□□□□ -0.08
USP28-212ENST00000544750 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.52□□□□□ -0.09
USP28-212ENST00000544750 PSAPP07602 524 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 FGFR4P22455 802 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 ALDH7A1P49419 539 aaKnown RBP14.52□□□□□ -0.09
USP28-212ENST00000544750 GIT2Q14161 759 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 JAKMIP3Q5VZ66 844 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 CREB3L3Q68CJ9 461 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 TRMT1LQ7Z2T5 733 aaKnown RBP14.52□□□□□ -0.09
USP28-212ENST00000544750 GPR149Q86SP6 731 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 DDX53Q86TM3 631 aaKnown RBP14.52□□□□□ -0.09
USP28-212ENST00000544750 RNF169Q8NCN4 708 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 BCL7CQ8WUZ0 217 aaPredicted RBP14.52□□□□□ -0.09
USP28-212ENST00000544750 LENG9Q96B70 501 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 IGSF21Q96ID5 467 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 ZNF668Q96K58 619 aaPredicted RBP14.52□□□□□ -0.09
USP28-212ENST00000544750 FAM167AQ96KS9 214 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 ZNF577Q9BSK1 485 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 VN1R3Q9BXE9 311 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 BRPF3Q9ULD4 1205 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 DUSP12Q9UNI6 340 aa14.52□□□□□ -0.09
USP28-212ENST00000544750 CACNA1IQ9P0X4 2223 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 DOCK6Q96HP0 2047 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 GALTP07902 379 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 TMOD1P28289 359 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 PHKA2P46019 1235 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 SETQ01105 290 aaPredicted RBP14.51□□□□□ -0.09
USP28-212ENST00000544750 ANGPT1Q15389 498 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 TMC5Q6UXY8 1006 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 FLCNQ8NFG4 579 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 RSPH1Q8WYR4 309 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 NRDE2Q9H7Z3 1164 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 DACT1Q9NYF0 836 aa14.51□□□□□ -0.09
USP28-212ENST00000544750 CEP250Q9BV73 2442 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 ESYT2A0FGR8 921 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 MEIS3P2A8K0S8 358 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 EDIL3O43854 480 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 B4GALT3O60512 393 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 ZC3H11AO75152 810 aaKnown RBP eCLIP14.5□□□□□ -0.097e-6■■■■■ 33.7
USP28-212ENST00000544750 CSDE1O75534 798 aaKnown RBP14.5□□□□□ -0.09
USP28-212ENST00000544750 OATP04181 439 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 CDC27P30260 824 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 CIITAP33076 1130 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 EXOSC10Q01780 885 aaKnown RBP14.5□□□□□ -0.09
USP28-212ENST00000544750 DRP2Q13474 957 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 TDGQ13569 410 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 BMS1Q14692 1282 aaKnown RBP14.5□□□□□ -0.09
USP28-212ENST00000544750 TARBP2Q15633 366 aaKnown RBP14.5□□□□□ -0.09
USP28-212ENST00000544750 PTPN14Q15678 1187 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 RTN1Q16799 776 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 DTWD2Q8NBA8 298 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 CEP89Q96ST8 783 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 RTP3Q9BQQ7 232 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 ZMYND12Q9H0C1 365 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 SFXN1Q9H9B4 322 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 KCNK12Q9HB15 430 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 CHST12Q9NRB3 414 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 TBC1D13Q9NVG8 400 aa14.5□□□□□ -0.09
USP28-212ENST00000544750 TDRD15B5MCY1 1934 aaKnown RBP14.49□□□□□ -0.09
USP28-212ENST00000544750 CARNS1A5YM72 827 aa14.49□□□□□ -0.09
USP28-212ENST00000544750 LILRB3O75022 631 aa14.49□□□□□ -0.09
USP28-212ENST00000544750 N4BP1O75113 896 aaKnown RBP14.49□□□□□ -0.09
USP28-212ENST00000544750 CA8P35219 290 aa14.49□□□□□ -0.09
USP28-212ENST00000544750 UGCGQ16739 394 aa14.49□□□□□ -0.09
USP28-212ENST00000544750 SYNE3Q6ZMZ3 975 aa14.49□□□□□ -0.09
USP28-212ENST00000544750 OTOP3Q7RTS5 596 aa14.49□□□□□ -0.09
USP28-212ENST00000544750 CABP7Q86V35 215 aa14.49□□□□□ -0.09
USP28-212ENST00000544750 LPPQ93052 612 aa14.49□□□□□ -0.09
USP28-212ENST00000544750 ACSF2Q96CM8 615 aaPredicted RBP14.49□□□□□ -0.09
USP28-212ENST00000544750 IGKV6-21A0A0C4DH24 114 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 WDR64B1ANS9 1081 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 ZBTB43O43298 467 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 ZNF623O75123 536 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 OFD1O75665 1012 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 CLCN4P51793 760 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 PRKCEQ02156 737 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 PFKFB3Q16875 520 aaPredicted RBP14.48□□□□□ -0.09
USP28-212ENST00000544750 C15orf39Q6ZRI6 1047 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 CCDC149Q6ZUS6 474 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 PPFIBP1Q86W92 1011 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 KLHL5Q96PQ7 755 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 DISC1Q9NRI5 854 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 NRBP2Q9NSY0 501 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 DNAJB4Q9UDY4 337 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 MIA3Q5JRA6 1907 aa14.48□□□□□ -0.09
USP28-212ENST00000544750 KRBA1A5PL33 1030 aa14.47□□□□□ -0.09
USP28-212ENST00000544750 NARSO43776 548 aaKnown RBP14.47□□□□□ -0.09
USP28-212ENST00000544750 STBD1O95210 358 aa14.47□□□□□ -0.09
USP28-212ENST00000544750 SLC11A1P49279 550 aa14.47□□□□□ -0.09
USP28-212ENST00000544750 TBC1D8BQ0IIM8 1120 aa14.47□□□□□ -0.09
USP28-212ENST00000544750 LETM2Q2VYF4 491 aa14.47□□□□□ -0.09
USP28-212ENST00000544750 PRR16Q569H4 304 aa14.47□□□□□ -0.09
USP28-212ENST00000544750 NOMO2Q5JPE7 1267 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms