RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 BPIFA3Q9BQP9 254 aa13.71□□□□□ -0.22
CHD4-211ENST00000544484 C1orf167Q5SNV9 1468 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 SPDYE2BA6NHP3 402 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 HUS1O60921 280 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 SPDYE6P0CI01 402 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 USP11P51784 963 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 GLYCTKQ8IVS8 523 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 PRPF31Q8WWY3 499 aaKnown RBP13.7□□□□□ -0.22
CHD4-211ENST00000544484 NUP85Q9BW27 656 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 EMSYQ7Z589 1322 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 PRAMEF18Q5VWM3 479 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 DPF2Q92785 391 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 EXT2Q93063 718 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 ALDH8A1Q9H2A2 487 aaPredicted RBP13.7□□□□□ -0.22
CHD4-211ENST00000544484 CEP55Q53EZ4 464 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 HAUS6Q7Z4H7 955 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 ADGRB3O60242 1522 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 CCDC188H7C350 402 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 STX1BP61266 288 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 NAA30Q147X3 362 aaPredicted RBP13.7□□□□□ -0.22
CHD4-211ENST00000544484 MTF1Q14872 753 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 HP1BP3Q5SSJ5 553 aaPredicted RBP13.7□□□□□ -0.22
CHD4-211ENST00000544484 ZNF564Q8TBZ8 553 aaPredicted RBP13.7□□□□□ -0.22
CHD4-211ENST00000544484 M0QYV0 167 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 SF3B3Q15393 1217 aaKnown RBP13.7□□□□□ -0.22
CHD4-211ENST00000544484 MADDQ8WXG6 1647 aa13.7□□□□□ -0.22
CHD4-211ENST00000544484 PNMA6AP0CW24 399 aaPredicted RBP13.69□□□□□ -0.22
CHD4-211ENST00000544484 GNA15P30679 374 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 TNFAIP2Q03169 654 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 NAALADL2Q58DX5 795 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 GBP7Q8N8V2 638 aaPredicted RBP13.69□□□□□ -0.22
CHD4-211ENST00000544484 LRGUKQ96M69 825 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 DDX47Q9H0S4 455 aaKnown RBP13.69□□□□□ -0.22
CHD4-211ENST00000544484 FAM217BQ9NTX9 383 aaPredicted RBP13.69□□□□□ -0.22
CHD4-211ENST00000544484 NDUFB10O96000 172 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 PMLP29590 882 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 ZNF543Q08ER8 600 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 SMAD1Q15797 465 aaKnown RBP13.69□□□□□ -0.22
CHD4-211ENST00000544484 KLHL29Q96CT2 875 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 ADGRG1Q9Y653 693 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 CUL1Q13616 776 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 ALS2CLQ60I27 953 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 KRT39Q6A163 491 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 MICALL2Q8IY33 904 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 GBP5Q96PP8 586 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 RBAKQ9NYW8 714 aaPredicted RBP13.69□□□□□ -0.22
CHD4-211ENST00000544484 PCDHA10Q9Y5I2 948 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 ITPK1Q13572 414 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 TRIM42Q8IWZ5 723 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 KLHL8Q9P2G9 620 aaPredicted RBP13.69□□□□□ -0.22
CHD4-211ENST00000544484 CREB3O43889 395 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 CSF1RP07333 972 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 IL25Q9H293 177 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 ELP3Q9H9T3 547 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 EPB41L4AQ9HCS5 686 aaPredicted RBP13.69□□□□□ -0.22
CHD4-211ENST00000544484 UNC13BO14795 1591 aa13.69□□□□□ -0.22
CHD4-211ENST00000544484 GNAT1P11488 350 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 NCF2P19878 526 aaPredicted RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 MAML1Q92585 1016 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 SEL1LQ9UBV2 794 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 SYNGAP1Q96PV0 1343 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 CROCC2H7BZ55 1655 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 MIF4GDA9UHW6 222 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 RFC1P35251 1148 aaPredicted RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 E2F5Q15329 346 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 NUGGCQ68CJ6 796 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 CDC42EP5Q6NZY7 148 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 ZNF449Q6P9G9 518 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 TEX2Q8IWB9 1127 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 SLC9A2Q9UBY0 812 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 PSMC1P62191 440 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 ORC2Q13416 577 aaPredicted RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 EMBQ6PCB8 327 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 USP49Q70CQ1 688 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 PDCD7Q8N8D1 485 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 BEST2Q8NFU1 509 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 PPWD1Q96BP3 646 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 PHF20Q9BVI0 1012 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 TRIM9Q9C026 710 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 CEP152O94986 1710 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 LRRC43Q8N309 656 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 RBM41Q96IZ5 413 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 OSBPL9Q96SU4 736 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 MRPL4Q9BYD3 311 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 AGO2Q9UKV8 859 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 PODXLO00592 558 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 ADORA2BP29275 332 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 SOX5P35711 763 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 HDLBPQ00341 1268 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 EPHA7Q15375 998 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 EFCAB13Q8IY85 973 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 PDZD8Q8NEN9 1154 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 TTC17Q96AE7 1141 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 SPDL1Q96EA4 605 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 ZBED2Q9BTP6 218 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 CNOT7Q9UIV1 285 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 RRP15Q9Y3B9 282 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 YWHABP31946 246 aaKnown RBP13.68□□□□□ -0.22
CHD4-211ENST00000544484 ANTXR2P58335 489 aa13.68□□□□□ -0.22
CHD4-211ENST00000544484 SNCBQ16143 134 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms