RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CA8P35219 290 aa20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 ADD1P35611 737 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 ALDH7A1P49419 539 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 PRKCEQ02156 737 aa20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 DRP2Q13474 957 aa20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 ASTLQ6HA08 431 aaPredicted RBP20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 VPS52Q8N1B4 723 aa20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 REXO1Q8N1G1 1221 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 TDRD5Q8NAT2 981 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 SLC22A17Q8WUG5 538 aa20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 MRPL9Q9BYD2 267 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 IRAK3Q9Y616 596 aa20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 MTCL1Q9Y4B5 1905 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-214ENST00000542663 TDRD15B5MCY1 1934 aaKnown RBP20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 ARID2Q68CP9 1835 aa20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 WDR64B1ANS9 1081 aa20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 RCAN1P53805 252 aa20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 RNF20Q5VTR2 975 aa20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 BCL7CQ8WUZ0 217 aaPredicted RBP20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 TMEM169Q96HH4 297 aa20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 DISC1Q9NRI5 854 aa20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 NRBP2Q9NSY0 501 aa20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 DZANK1Q9NVP4 752 aa20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 DACT1Q9NYF0 836 aa20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 TCEAL9Q9UHQ7 104 aa20.12■□□□□ 0.81
CLSTN3-214ENST00000542663 DOCK8Q8NF50 2099 aa20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 ZC3H11AO75152 810 aaKnown RBP eCLIP20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 PHKA2P46019 1235 aa20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 TARBP2Q15633 366 aaKnown RBP20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 TSGA10IPQ3SY00 556 aa20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 MCTP2Q6DN12 878 aa20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 NLRP7Q8WX94 980 aa20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 LPPQ93052 612 aa20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 SCLT1Q96NL6 688 aa20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 CEP89Q96ST8 783 aa20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 C6orf50Q9HD87 102 aa20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 DBR1Q9UK59 544 aaKnown RBP20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 USTQ9Y2C2 406 aa20.11■□□□□ 0.81
CLSTN3-214ENST00000542663 MEIS3P2A8K0S8 358 aa20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 MSH4O15457 936 aa20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 CTSAP10619 480 aa20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 ATAT1Q5SQI0 421 aa20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 CWF19L1Q69YN2 538 aaKnown RBP20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 DDX53Q86TM3 631 aaKnown RBP20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 IGSF21Q96ID5 467 aa20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 TRAIPQ9BWF2 469 aa20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 VN1R3Q9BXE9 311 aa20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 NRDE2Q9H7Z3 1164 aa20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 TBC1D13Q9NVG8 400 aa20.1■□□□□ 0.81
CLSTN3-214ENST00000542663 B4GALT3O60512 393 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 CLCN5P51795 746 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 POLGP54098 1239 aaPredicted RBP20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 IRX6P78412 446 aaPredicted RBP20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 TBC1D8BQ0IIM8 1120 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 LONRF3Q496Y0 759 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 TMC5Q6UXY8 1006 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 FRMD5Q7Z6J6 570 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 PLCD3Q8N3E9 789 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 CCDC12Q8WUD4 166 aaPredicted RBP20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 SLC5A5Q92911 643 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 GJA10Q969M2 543 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 UNC45AQ9H3U1 944 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 CHST12Q9NRB3 414 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 DNAJB4Q9UDY4 337 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 FANCMQ8IYD8 2048 aa20.09■□□□□ 0.81
CLSTN3-214ENST00000542663 NID2Q14112 1375 aa20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 IGKV6-21A0A0C4DH24 114 aa20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 TMEM150BA6NC51 233 aa20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 CHMP2AO43633 222 aa20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 STBD1O95210 358 aa20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 GALTP07902 379 aa20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 GIT2Q14161 759 aa20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 BMS1Q14692 1282 aaKnown RBP20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 RIT2Q99578 217 aa20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 MFSD1Q9H3U5 465 aa20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 CYP26B1Q9NR63 512 aa20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 NAP1L2Q9ULW6 460 aaPredicted RBP20.08■□□□□ 0.81
CLSTN3-214ENST00000542663 WDR87Q6ZQQ6 2873 aa20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 A0A087WZ62 844 aa20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 PRPF3O43395 683 aaKnown RBP20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 CPA1P15085 419 aa20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 NPR3P17342 541 aa20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 GNA11P29992 359 aa20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 SFNP31947 248 aa20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 FOXK2Q01167 660 aa20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 PTPN14Q15678 1187 aa20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 CCDC136Q96JN2 1154 aa20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 SH2D3AQ9BRG2 576 aa20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 FDXACB1Q9BRP7 624 aaPredicted RBP20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 NIFKQ9BYG3 293 aaKnown RBP20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 GCOM2Q9BZD3 368 aaPredicted RBP20.07■□□□□ 0.8
CLSTN3-214ENST00000542663 PI15O43692 258 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 GAS7O60861 476 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 OFD1O75665 1012 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 PSMD10O75832 226 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 SLC11A1P49279 550 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 JAK3P52333 1124 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 MTERF2Q49AM1 385 aa20.06■□□□□ 0.8
CLSTN3-214ENST00000542663 NOMO2Q5JPE7 1267 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms