RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 FRMD5Q7Z6J6 570 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 C18orf8Q96DM3 657 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 NUCKS1Q9H1E3 243 aaKnown RBP14.69□□□□□ -0.06
PTPN1-202ENST00000541713 CAPN7Q9Y6W3 813 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 NAV1Q8NEY1 1877 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 CDR1P51861 262 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 EDRF1Q3B7T1 1238 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 TTC31Q49AM3 519 aaPredicted RBP14.69□□□□□ -0.06
PTPN1-202ENST00000541713 SEZ6Q53EL9 994 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 XKR9Q5GH70 373 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 STRIP1Q5VSL9 837 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 CAPN12Q6ZSI9 719 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 RPUSD2Q8IZ73 545 aaKnown RBP14.69□□□□□ -0.06
PTPN1-202ENST00000541713 BTAF1O14981 1849 aa14.69□□□□□ -0.06
PTPN1-202ENST00000541713 TCRBV7S2A1N4TA0A589 114 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 MYO1FO00160 1098 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 SPOPO43791 374 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 LCA5LO95447 670 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 SGPL1O95470 568 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 MYZAPP0CAP1 466 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 MAGOHP61326 146 aaKnown RBP14.68□□□□□ -0.06
PTPN1-202ENST00000541713 PPP3CAQ08209 521 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 SPIRE2Q8WWL2 714 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 MAGOHBQ96A72 148 aaKnown RBP14.68□□□□□ -0.06
PTPN1-202ENST00000541713 TAF1DQ9H5J8 278 aaPredicted RBP14.68□□□□□ -0.06
PTPN1-202ENST00000541713 COL20A1Q9P218 1284 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 GOLGA8KD6RF30 607 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 F8VZ95 297 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 TULP2O00295 520 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 KIAA0754O94854 1291 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 ITGB5P18084 799 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 SOX5P35711 763 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 PRELPP51888 382 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 CYFIP1Q7L576 1253 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 CBWD2Q8IUF1 395 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 PASD1Q8IV76 773 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 ALG3Q92685 438 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 BICD1Q96G01 975 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 FAM20AQ96MK3 541 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 KCNH7Q9NS40 1196 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 PCDHGC5Q9Y5F6 944 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 CEP350Q5VT06 3117 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 PHF20L1A8MW92 1017 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 EIF3HO15372 352 aaKnown RBP eCLIP14.68□□□□□ -0.06
PTPN1-202ENST00000541713 ZNF720Q7Z2F6 126 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 HSD17B14Q9BPX1 270 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 HEMGNQ9BXL5 484 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 COG5Q9UP83 839 aa14.68□□□□□ -0.06
PTPN1-202ENST00000541713 ADAMTSL1Q8N6G6 1762 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 MYO3BQ8WXR4 1341 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 FOSP01100 380 aaPredicted RBP14.67□□□□□ -0.06
PTPN1-202ENST00000541713 FGFR4P22455 802 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 NOVP48745 357 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 C1orf186Q6ZWK4 172 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 PRUNE1Q86TP1 453 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 OTUD6BQ8N6M0 293 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 PIK3R5Q8WYR1 880 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 AKT1S1Q96B36 256 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 FAM212AQ96EL1 285 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.67□□□□□ -0.061e-9■■□□□ 14.5
PTPN1-202ENST00000541713 TRAF3IP3Q9Y228 551 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 USTQ9Y2C2 406 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 IGLV3-22A0A075B6J6 115 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 SHBGP04278 402 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 LSP1P33241 339 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 TRIM7Q9C029 511 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 ATP9AO75110 1047 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 EGFRP00533 1210 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 ORC2Q13416 577 aaPredicted RBP14.67□□□□□ -0.06
PTPN1-202ENST00000541713 SLC47A2Q86VL8 602 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 C1orf54Q8WWF1 131 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 PWWP2AQ96N64 755 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 TEKT3Q9BXF9 490 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 METTL14Q9HCE5 456 aaKnown RBP14.67□□□□□ -0.06
PTPN1-202ENST00000541713 KLHL11Q9NVR0 708 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 TSKSQ9UJT2 592 aa14.67□□□□□ -0.06
PTPN1-202ENST00000541713 UTP11Q9Y3A2 253 aaKnown RBP14.67□□□□□ -0.06
PTPN1-202ENST00000541713 UGCGQ16739 394 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 CCDC105Q8IYK2 499 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 TAAR1Q96RJ0 339 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 ERLIN2O94905 339 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 GJB6O95452 261 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 PRLRP16471 622 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 EN1Q05925 392 aaPredicted RBP14.66□□□□□ -0.06
PTPN1-202ENST00000541713 UAP1Q16222 522 aaPredicted RBP14.66□□□□□ -0.06
PTPN1-202ENST00000541713 ZNF662Q6ZS27 426 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 NT5DC3Q86UY8 548 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 ATG4AQ8WYN0 398 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 THOC1Q96FV9 657 aaKnown RBP14.66□□□□□ -0.06
PTPN1-202ENST00000541713 NACC1Q96RE7 527 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 GDF3Q9NR23 364 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 ALG6Q9Y672 507 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 COL22A1Q8NFW1 1626 aaPredicted RBP14.66□□□□□ -0.06
PTPN1-202ENST00000541713 PITPNM2Q9BZ72 1349 aa14.66□□□□□ -0.06
PTPN1-202ENST00000541713 LRRC14Q15048 493 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 HYIQ5T013 277 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 IQCKQ8N0W5 287 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 IQCDQ96DY2 449 aa14.65□□□□□ -0.06
PTPN1-202ENST00000541713 ZNF70Q9UC06 446 aaPredicted RBP14.65□□□□□ -0.06
PTPN1-202ENST00000541713 PNMA2Q9UL42 364 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms