RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 GAP43P17677 238 aa19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 SFPQP23246 707 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 EIF4BP23588 611 aaKnown RBP19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 GPC3P51654 580 aa19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 LAMTOR4Q0VGL1 99 aa19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 NAALADL2Q58DX5 795 aa19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 TSHZ1Q6ZSZ6 1077 aa19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 IFNLR1Q8IU57 520 aaPredicted RBP19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 CNNM3Q8NE01 707 aa19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 TMEM143Q96AN5 459 aa19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 FTHL17Q9BXU8 183 aa19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 UBE2OQ9C0C9 1292 aaKnown RBP19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 POLR3FQ9H1D9 316 aaPredicted RBP19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 PARVGQ9HBI0 331 aa19.38■□□□□ 0.69
CLSTN3-210ENST00000540931 GPR32O75388 356 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 FAM13AO94988 1023 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 ZNF202O95125 648 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 NDUFA8P51970 172 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 MGAT3Q09327 533 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 PSRC1Q6PGN9 363 aaPredicted RBP19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 SH3RF1Q7Z6J0 888 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 CCDC65Q8IXS2 484 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 PPP1R13LQ8WUF5 828 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 SPIRE2Q8WWL2 714 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 SEPT8Q92599 483 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 NTPCRQ9BSD7 190 aaKnown RBP19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 EVPLQ92817 2033 aa19.37■□□□□ 0.69
CLSTN3-210ENST00000540931 PVALEFA0A1B0GWK0 134 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 KINO60870 393 aaKnown RBP19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 HIP1RO75146 1068 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 PRPF40AO75400 957 aaKnown RBP19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 CHRNA1P02708 482 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 CXCL10P02778 98 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 VTNP04004 478 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 MAPTP10636 758 aaKnown RBP19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 PLS3P13797 630 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 CYP2C18P33260 490 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 MKRN4PQ13434 485 aaPredicted RBP19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 DHX8Q14562 1220 aaKnown RBP19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 FBXO47Q5MNV8 452 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 STXBP4Q6ZWJ1 553 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 RNF149Q8NC42 400 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 DEPTORQ8TB45 409 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 DDX12PQ92771 950 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 KCNN1Q92952 543 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 PRIMPOLQ96LW4 560 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 C7orf25Q9BPX7 421 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 RUSC1Q9BVN2 902 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 ADAMTS10Q9H324 1103 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 IL23AQ9NPF7 189 aa19.36■□□□□ 0.69
CLSTN3-210ENST00000540931 A0A087WWV3 80 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 A0A087X0B3 334 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 RPS6KA5O75582 802 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 BAIAP3O94812 1187 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 CTSHP09668 335 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 DARSP14868 501 aaKnown RBP19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 AXLP30530 894 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 ZNF131P52739 623 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 CCL23P55773 120 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 PTENP60484 403 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 ALCAMQ13740 583 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 GIT2Q14161 759 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 KIZQ2M2Z5 673 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 CNKSR3Q6P9H4 555 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 KRBA2Q6ZNG9 492 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 APBB1IPQ7Z5R6 666 aaPredicted RBP19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 CHAMP1Q96JM3 812 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 NLRP4Q96MN2 994 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 WNT8AQ9H1J5 351 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 CHST12Q9NRB3 414 aa19.35■□□□□ 0.69
CLSTN3-210ENST00000540931 ABHD14A-ACY1A0A1B0GW23 586 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 SRGAP2CP0DJJ0 459 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 GLRA2P23416 452 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 PAK2Q13177 524 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 ARSHQ5FYA8 562 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 TRAF7Q6Q0C0 670 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 FMR1NBQ8N0W7 255 aaPredicted RBP19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 BADQ92934 168 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 WNT8BQ93098 351 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 REEP2Q9BRK0 252 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 IFIH1Q9BYX4 1025 aaKnown RBP19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 TRIM9Q9C026 710 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 TMEM134Q9H6X4 195 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 PRMT7Q9NVM4 692 aaPredicted RBP19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 GINS2Q9Y248 185 aa19.34■□□□□ 0.69
CLSTN3-210ENST00000540931 DNAH12Q6ZR08 3092 aa19.33■□□□□ 0.69
CLSTN3-210ENST00000540931 A0A087WZ62 844 aa19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 LRRIQ4A6NIV6 560 aa19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 ACTN4O43707 911 aaKnown RBP19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 GTPBP6O43824 516 aaPredicted RBP19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 MBD3O95983 291 aa19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 ZSCAN20P17040 1043 aaPredicted RBP19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 PSMD2Q13200 908 aa19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 IKBKEQ14164 716 aa19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 MAPK6Q16659 721 aa19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 LONRF3Q496Y0 759 aa19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 PLEKHG4Q58EX7 1191 aa19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 CDCA2Q69YH5 1023 aaPredicted RBP19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 MAEAQ7L5Y9 396 aa19.33■□□□□ 0.68
CLSTN3-210ENST00000540931 MYCT1Q8N699 235 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms