RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 CYP2J2P51589 502 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 ITGADQ13349 1161 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 ARMCX4Q5H9R4 360 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 ALKBH5Q6P6C2 394 aaKnown RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 C16orf89Q6UX73 402 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 GIPC3Q8TF64 312 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 STK32AQ8WU08 396 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 EDEM3Q9BZQ6 932 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 DDX56Q9NY93 547 aaKnown RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 KPNA7A9QM74 516 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 ADCY6O43306 1168 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 PYGLP06737 847 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 FAM58BPP0C7Q3 252 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 PDIA3P30101 505 aaKnown RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 CIITAP33076 1130 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 ARL4CP56559 192 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 STAT4Q14765 748 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 MAPK11Q15759 364 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 RNF19BQ6ZMZ0 732 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 NSUN7Q8NE18 718 aaKnown RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 TELO2Q9Y4R8 837 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 CDC27P30260 824 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 PTGS2P35354 604 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 C1orf228Q6PIY5 440 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 MPRIPQ6WCQ1 1025 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 CNBD1Q8NA66 436 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 SMCR8Q8TEV9 937 aaPredicted RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 AGAP11Q8TF27 550 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 GLMNQ92990 594 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 TMEM245Q9H330 911 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 CCSER2Q9H7U1 834 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 MAGEF1Q9HAY2 307 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 FANCEQ9HB96 536 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 ALG13Q9NP73 1137 aaKnown RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 DNAAF2Q9NVR5 837 aaKnown RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 AMACRQ9UHK6 382 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 DMRT2Q9Y5R5 561 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 SCAF11Q99590 1463 aaKnown RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 FAM47DPA6NHR8 397 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 RECQLP46063 649 aaPredicted RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 PPARAQ07869 468 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 NCAPHQ15003 741 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 LRRC74BQ6ZQY2 392 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 RASGRP2Q7LDG7 609 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 YTHDF3Q7Z739 585 aaKnown RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 NSMCE4AQ9NXX6 385 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 SUN2Q9UH99 717 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 UBE4BO95155 1302 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 TRIM24O15164 1050 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 CNOT3O75175 753 aaKnown RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 CPA2P48052 419 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 PSEN1P49768 467 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 DHX34Q14147 1143 aaKnown RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 ZNF618Q5T7W0 954 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 ATP8B4Q8TF62 1192 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 RNF34Q969K3 372 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 GOLPH3LQ9H4A5 285 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 SOX13Q9UN79 622 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 MAP3K5Q99683 1374 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 PNMA6EA0A0J9YXQ4 647 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 LINC00854A0A1B0GVQ3 168 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 SASH3O75995 380 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 STARD3NLO95772 234 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 MAPRE2Q15555 327 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 SCYL2Q6P3W7 929 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 ANKRD13DQ6ZTN6 518 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 GPBP1Q86WP2 473 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 GATAD2AQ86YP4 633 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 PHF21AQ96BD5 680 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 CHID1Q9BWS9 393 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 STX7O15400 261 aaKnown RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 GFPT2O94808 682 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 KLHL2O95198 593 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 TNFAIP8O95379 198 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 LARGE1O95461 756 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 MSL3P1P0C860 447 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 GFPT1Q06210 699 aaPredicted RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 SLC9A5Q14940 896 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 LONRF1Q17RB8 773 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 KLHL12Q53G59 568 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 MMGT1Q8N4V1 131 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 NDST4Q9H3R1 872 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 MOSPD1Q9UJG1 213 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 ARHGEF35A5YM69 484 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 LGALS16A8MUM7 142 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 MIF4GDA9UHW6 222 aaKnown RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 SNPHO15079 494 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 KRT1P04264 644 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 MCL1Q07820 350 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 PTGDRQ13258 359 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 CLVS1Q8IUQ0 354 aaPredicted RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 CLEC4FQ8N1N0 589 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 MIGA1Q8NAN2 632 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 ZNF507Q8TCN5 953 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 UBE2OQ9C0C9 1292 aaKnown RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 ZBTB3Q9H5J0 574 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 SELENONQ9NZV5 590 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 STK39Q9UEW8 545 aa9.3□□□□□ -0.92
YBX3-208ENST00000540447 RBMX2Q9Y388 322 aaKnown RBP9.3□□□□□ -0.92
YBX3-208ENST00000540447 CALB2P22676 271 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms