RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 ANKRD20A12PQ8NF67 263 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 CCDC148Q8NFR7 591 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 CCDC12Q8WUD4 166 aaPredicted RBP7.37□□□□□ -1.23
USP28-202ENST00000535607 VWCEQ96DN2 955 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 CCDC51Q96ER9 411 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 ZNF274Q96GC6 653 aaPredicted RBP7.37□□□□□ -1.23
USP28-202ENST00000535607 SGSM3Q96HU1 749 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 HRASLS5Q96KN8 279 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 PANX2Q96RD6 677 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 EIF3CQ99613 913 aaKnown RBP7.37□□□□□ -1.23
USP28-202ENST00000535607 CDC6Q99741 560 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 GPR62Q9BZJ7 368 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 CHPF2Q9P2E5 772 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 RAB21Q9UL25 225 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 SNX11Q9Y5W9 270 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 BCORQ6W2J9 1755 aa7.37□□□□□ -1.23
USP28-202ENST00000535607 PTPDC1A2A3K4 754 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 CTAGE15A4D2H0 777 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 EBAG9O00559 213 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 PLSCR1O15162 318 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 SPTLC2O15270 562 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 KCNQ2O43526 872 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 CDKL5O76039 1030 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 PRAMEF1O95521 474 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 CTAGE8P0CG41 777 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 RDXP35241 583 aaKnown RBP7.36□□□□□ -1.23
USP28-202ENST00000535607 IL6STP40189 918 aaPredicted RBP7.36□□□□□ -1.23
USP28-202ENST00000535607 PIP4K2AP48426 406 aaPredicted RBP7.36□□□□□ -1.23
USP28-202ENST00000535607 POU4F1Q01851 419 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 CEBPZQ03701 1054 aaKnown RBP7.36□□□□□ -1.23
USP28-202ENST00000535607 FILIP1LQ4L180 1135 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 PRSS36Q5K4E3 855 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 SPECC1LQ69YQ0 1117 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 CPLX2Q6PUV4 134 aaKnown RBP7.36□□□□□ -1.23
USP28-202ENST00000535607 B4GALNT4Q76KP1 1039 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 FAM214BQ7L5A3 538 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 TMC3Q7Z5M5 1100 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 THAP5Q7Z6K1 395 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 CTAGE6Q86UF2 777 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 REXO1L1PQ8IX06 675 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 CTAGE4Q8IX94 777 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 ZNF655Q8N720 491 aaPredicted RBP7.36□□□□□ -1.23
USP28-202ENST00000535607 SYTL5Q8TDW5 730 aaPredicted RBP7.36□□□□□ -1.23
USP28-202ENST00000535607 AFAP1L1Q8TED9 768 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 ASB11Q8WXH4 323 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 MISP3Q96FF7 219 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 Q96M66 194 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 ZDHHC15Q96MV8 337 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 CTAGE1Q96RT6 745 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 IL25Q9H293 177 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 ZSWIM5Q9P217 1185 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 CDC23Q9UJX2 597 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 ANKRD36CQ5JPF3 1778 aa7.36□□□□□ -1.23
USP28-202ENST00000535607 QSER1Q2KHR3 1735 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 TLDC2A0PJX2 215 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 KIAA0754O94854 1291 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 ERLIN2O94905 339 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 SEC31AO94979 1220 aaKnown RBP7.35□□□□□ -1.23
USP28-202ENST00000535607 ZNF202O95125 648 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 GSNP06396 782 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 CCDC172P0C7W6 258 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 CYP19A1P11511 503 aaPredicted RBP7.35□□□□□ -1.23
USP28-202ENST00000535607 EIF2S2P20042 333 aaKnown RBP7.35□□□□□ -1.23
USP28-202ENST00000535607 ENDOUP21128 410 aaKnown RBP7.35□□□□□ -1.23
USP28-202ENST00000535607 TPP2P29144 1249 aaPredicted RBP7.35□□□□□ -1.23
USP28-202ENST00000535607 MAP2K2P36507 400 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 PCBP3P57721 371 aaKnown RBP7.35□□□□□ -1.23
USP28-202ENST00000535607 AMPD2Q01433 879 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 CKAP4Q07065 602 aaKnown RBP7.35□□□□□ -1.23
USP28-202ENST00000535607 MCMDC2Q4G0Z9 681 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 TADA2BQ86TJ2 420 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 DNAJC10Q8IXB1 793 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 STK11IPQ8N1F8 1099 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 PLD6Q8N2A8 252 aaKnown RBP7.35□□□□□ -1.23
USP28-202ENST00000535607 PDILTQ8N807 584 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 TRIML1Q8N9V2 468 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 MLKLQ8NB16 471 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 RUBCNQ92622 972 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 UBE2FQ969M7 185 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 RCC1LQ96I51 464 aaKnown RBP7.35□□□□□ -1.23
USP28-202ENST00000535607 C8orf76Q96K31 380 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 HSPA12BQ96MM6 686 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 USP28Q96RU2 1077 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 SPATA9Q9BWV2 254 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 GOLPH3LQ9H4A5 285 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 ZMYM5Q9UJ78 669 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 CCNL1Q9UK58 526 aaPredicted RBP7.35□□□□□ -1.23
USP28-202ENST00000535607 PCDHA7Q9UN72 937 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 C4AP0C0L4 1744 aa7.35□□□□□ -1.23
USP28-202ENST00000535607 ADCY9O60503 1353 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 COL15A1P39059 1388 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 KAT6BQ8WYB5 2073 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 MAP3K15Q6ZN16 1313 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 ATXN2Q99700 1313 aaKnown RBP7.34□□□□□ -1.23
USP28-202ENST00000535607 PRAMEF22A3QJZ6 481 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 VWA3AA6NCI4 1184 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 TMCO5BA8MYB1 307 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 AKR1B15C9JRZ8 316 aaPredicted RBP7.34□□□□□ -1.23
USP28-202ENST00000535607 CUTAO60888 179 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 COBLO75128 1261 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms