RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 RNF149Q8NC42 400 aa23.63■■□□□ 1.37
CAPN1-220ENST00000530567 NLRP7Q8WX94 980 aa23.63■■□□□ 1.37
CAPN1-220ENST00000530567 KIFAP3Q92845 792 aa23.63■■□□□ 1.37
CAPN1-220ENST00000530567 TNMDQ9H2S6 317 aa23.63■■□□□ 1.37
CAPN1-220ENST00000530567 NOC2LQ9Y3T9 749 aaKnown RBP23.63■■□□□ 1.37
CAPN1-220ENST00000530567 PFKMP08237 780 aa23.62■■□□□ 1.37
CAPN1-220ENST00000530567 SRGAP2CP0DJJ0 459 aa23.62■■□□□ 1.37
CAPN1-220ENST00000530567 GIT2Q14161 759 aa23.62■■□□□ 1.37
CAPN1-220ENST00000530567 PYM1Q9BRP8 204 aaKnown RBP23.62■■□□□ 1.37
CAPN1-220ENST00000530567 PRO3102Q9H379 93 aa23.62■■□□□ 1.37
CAPN1-220ENST00000530567 SERTAD1Q9UHV2 236 aa23.62■■□□□ 1.37
CAPN1-220ENST00000530567 EIF4BP23588 611 aaKnown RBP23.61■■□□□ 1.37
CAPN1-220ENST00000530567 CD52P31358 61 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 SYKP43405 635 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 POU5F1BQ06416 359 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 LONRF3Q496Y0 759 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 TMEM240Q5SV17 173 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 FAM228AQ86W67 206 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 IFNLR1Q8IU57 520 aaPredicted RBP23.61■■□□□ 1.37
CAPN1-220ENST00000530567 RPUSD2Q8IZ73 545 aaKnown RBP23.61■■□□□ 1.37
CAPN1-220ENST00000530567 USP38Q8NB14 1042 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 STAMQ92783 540 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 DNAJC19Q96DA6 116 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 DRC1Q96MC2 740 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 SCLT1Q96NL6 688 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 IFIH1Q9BYX4 1025 aaKnown RBP23.61■■□□□ 1.37
CAPN1-220ENST00000530567 MAGEF1Q9HAY2 307 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 ODF2LQ9ULJ1 636 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 MYH11P35749 1972 aa23.61■■□□□ 1.37
CAPN1-220ENST00000530567 GOLGA6L4A6NEF3 574 aa23.6■■□□□ 1.37
CAPN1-220ENST00000530567 CSDE1O75534 798 aaKnown RBP23.6■■□□□ 1.37
CAPN1-220ENST00000530567 SLFN14P0C7P3 912 aa23.6■■□□□ 1.37
CAPN1-220ENST00000530567 ZNF131P52739 623 aa23.6■■□□□ 1.37
CAPN1-220ENST00000530567 PTENP60484 403 aa23.6■■□□□ 1.37
CAPN1-220ENST00000530567 ENGASEQ8NFI3 743 aa23.6■■□□□ 1.37
CAPN1-220ENST00000530567 DBF4BQ8NFT6 615 aa23.6■■□□□ 1.37
CAPN1-220ENST00000530567 DDX12PQ92771 950 aa23.6■■□□□ 1.37
CAPN1-220ENST00000530567 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.6■■□□□ 1.372e-7■■■■□ 26.5
CAPN1-220ENST00000530567 GCOM2Q9BZD3 368 aaPredicted RBP23.6■■□□□ 1.37
CAPN1-220ENST00000530567 MINDY3Q9H8M7 445 aa23.6■■□□□ 1.37
CAPN1-220ENST00000530567 ERVK-5Q9HDB9 667 aa23.6■■□□□ 1.37
CAPN1-220ENST00000530567 RANBP2P49792 3224 aaKnown RBP23.6■■□□□ 1.37
CAPN1-220ENST00000530567 ADGRA3Q8IWK6 1321 aa23.6■■□□□ 1.37
CAPN1-220ENST00000530567 SFI1A8K8P3 1242 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 NAMPTP43490 491 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 TFDP1Q14186 410 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 CDCA2Q69YH5 1023 aaPredicted RBP23.59■■□□□ 1.37
CAPN1-220ENST00000530567 ZNF365Q70YC5 407 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 FMR1NBQ8N0W7 255 aaPredicted RBP23.59■■□□□ 1.37
CAPN1-220ENST00000530567 KIFC3Q9BVG8 833 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 NFKBIZQ9BYH8 718 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 USP25Q9UHP3 1055 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 PADI3Q9ULW8 664 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 RPS6KA5O75582 802 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 BMP8BP34820 402 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 SNW1Q13573 536 aaKnown RBP23.59■■□□□ 1.37
CAPN1-220ENST00000530567 CNKSR3Q6P9H4 555 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 PSRC1Q6PGN9 363 aaPredicted RBP23.59■■□□□ 1.37
CAPN1-220ENST00000530567 DYMQ7RTS9 669 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 TRIM9Q9C026 710 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 TMX1Q9H3N1 280 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 C17orf75Q9HAS0 396 aa23.59■■□□□ 1.37
CAPN1-220ENST00000530567 LRRIQ4A6NIV6 560 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 PRPF40AO75400 957 aaKnown RBP23.58■■□□□ 1.36
CAPN1-220ENST00000530567 ZNF202O95125 648 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 PLS3P13797 630 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 LIG1P18858 919 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 FGFR4P22455 802 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 PHKA2P46019 1235 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 NPTX2P47972 431 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 PEX3P56589 373 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 MBTD1Q05BQ5 628 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 PAK2Q13177 524 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 PPP2R5AQ15172 486 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 C9orf50Q5SZB4 431 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 PRPF38BQ5VTL8 546 aaKnown RBP23.58■■□□□ 1.36
CAPN1-220ENST00000530567 CNNM4Q6P4Q7 775 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 MICAL3Q7RTP6 2002 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 SRGAP1Q7Z6B7 1085 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 GRAMD1CQ8IYS0 662 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 SEPT8Q92599 483 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 UBE2OQ9C0C9 1292 aaKnown RBP23.58■■□□□ 1.36
CAPN1-220ENST00000530567 ST3GAL5Q9UNP4 418 aa23.58■■□□□ 1.36
CAPN1-220ENST00000530567 KRT18P05783 430 aaKnown RBP23.57■■□□□ 1.36
CAPN1-220ENST00000530567 UBE2HP62256 183 aa23.57■■□□□ 1.36
CAPN1-220ENST00000530567 FAM160A1Q05DH4 1040 aa23.57■■□□□ 1.36
CAPN1-220ENST00000530567 DMP1Q13316 513 aaPredicted RBP23.57■■□□□ 1.36
CAPN1-220ENST00000530567 CHRDL2Q6WN34 429 aa23.57■■□□□ 1.36
CAPN1-220ENST00000530567 CEP57L1Q8IYX8 460 aa23.57■■□□□ 1.36
CAPN1-220ENST00000530567 PAGE5Q96GU1 130 aa23.57■■□□□ 1.36
CAPN1-220ENST00000530567 IFT74Q96LB3 600 aa23.57■■□□□ 1.36
CAPN1-220ENST00000530567 GBP4Q96PP9 640 aa23.57■■□□□ 1.36
CAPN1-220ENST00000530567 C7orf25Q9BPX7 421 aa23.57■■□□□ 1.36
CAPN1-220ENST00000530567 FRMD3A2A2Y4 597 aa23.56■■□□□ 1.36
CAPN1-220ENST00000530567 FAM13AO94988 1023 aa23.56■■□□□ 1.36
CAPN1-220ENST00000530567 FGBP02675 491 aa23.56■■□□□ 1.36
CAPN1-220ENST00000530567 CASP1P29466 404 aa23.56■■□□□ 1.36
CAPN1-220ENST00000530567 AFMP43652 599 aa23.56■■□□□ 1.36
CAPN1-220ENST00000530567 RASIP1Q5U651 963 aa23.56■■□□□ 1.36
CAPN1-220ENST00000530567 KRBA2Q6ZNG9 492 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms