RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 A0A0U1RQF3 1178 aa22.98■■□□□ 1.27
VPS28-206ENST00000526734 CD2BP2O95400 341 aaKnown RBP22.98■■□□□ 1.27
VPS28-206ENST00000526734 EOMESO95936 686 aa22.98■■□□□ 1.27
VPS28-206ENST00000526734 GJB2P29033 226 aa22.98■■□□□ 1.27
VPS28-206ENST00000526734 FXR2P51116 673 aaKnown RBP eCLIP22.98■■□□□ 1.27
VPS28-206ENST00000526734 PAN2Q504Q3 1202 aaKnown RBP22.98■■□□□ 1.27
VPS28-206ENST00000526734 ECHDC2Q86YB7 292 aa22.98■■□□□ 1.27
VPS28-206ENST00000526734 PRPF31Q8WWY3 499 aaKnown RBP22.98■■□□□ 1.27
VPS28-206ENST00000526734 HLA-CQ95604 372 aa22.98■■□□□ 1.27
VPS28-206ENST00000526734 SMC3Q9UQE7 1217 aa22.98■■□□□ 1.27
VPS28-206ENST00000526734 NLRC5Q86WI3 1866 aa22.98■■□□□ 1.27
VPS28-206ENST00000526734 TBKBP1A7MCY6 615 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 H3BQV1 296 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 RPA1P27694 616 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 TECP42680 631 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 RARRES1P49788 294 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 RAB27AP51159 221 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 POU5F1BQ06416 359 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 LAMTOR4Q0VGL1 99 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 TFDP1Q14186 410 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 RILPL1Q5EBL4 403 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 CATSPER4Q7RTX7 472 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 FERMT3Q86UX7 667 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 ABI1Q8IZP0 508 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 TMEM143Q96AN5 459 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 NACC1Q96RE7 527 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 BACH2Q9BYV9 841 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 IFT122Q9HBG6 1241 aa22.97■■□□□ 1.27
VPS28-206ENST00000526734 DBR1Q9UK59 544 aaKnown RBP22.97■■□□□ 1.27
VPS28-206ENST00000526734 SPATA31C1P0DKV0 1188 aa22.96■■□□□ 1.27
VPS28-206ENST00000526734 IBSPP21815 317 aaPredicted RBP22.96■■□□□ 1.27
VPS28-206ENST00000526734 PHKA2P46019 1235 aa22.96■■□□□ 1.27
VPS28-206ENST00000526734 COL25A1Q9BXS0 654 aaPredicted RBP22.96■■□□□ 1.27
VPS28-206ENST00000526734 NSUN3Q9H649 340 aaKnown RBP22.96■■□□□ 1.27
VPS28-206ENST00000526734 XPNPEP1Q9NQW7 623 aa22.96■■□□□ 1.27
VPS28-206ENST00000526734 PIN4Q9Y237 131 aaKnown RBP22.96■■□□□ 1.27
VPS28-206ENST00000526734 PCDHB12Q9Y5F1 795 aa22.96■■□□□ 1.27
VPS28-206ENST00000526734 ZBTB39O15060 712 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 LAG3P18627 525 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 FGFR4P22455 802 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 PRPHP41219 470 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 GATMP50440 423 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 PDIA5Q14554 519 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 MCTP1Q6DN14 999 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 CATSPER3Q86XQ3 398 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 KSR1Q8IVT5 923 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 LRRC43Q8N309 656 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 C4orf32Q8N8J7 132 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 MRPL9Q9BYD2 267 aaKnown RBP22.95■■□□□ 1.26
VPS28-206ENST00000526734 AGPAT5Q9NUQ2 364 aa22.95■■□□□ 1.26
VPS28-206ENST00000526734 CARNS1A5YM72 827 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 NCK2O43639 380 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 FGFR1P11362 822 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 UBE3AQ05086 875 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 SPOUT1Q5T280 376 aaKnown RBP22.94■■□□□ 1.26
VPS28-206ENST00000526734 FAM102BQ5T8I3 360 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 TWF2Q6IBS0 349 aaKnown RBP22.94■■□□□ 1.26
VPS28-206ENST00000526734 ZNF598Q86UK7 904 aaKnown RBP22.94■■□□□ 1.26
VPS28-206ENST00000526734 IFNLR1Q8IU57 520 aaPredicted RBP22.94■■□□□ 1.26
VPS28-206ENST00000526734 RNF149Q8NC42 400 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 MCPH1Q8NEM0 835 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 PPP2R3CQ969Q6 453 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 BMP2KQ9NSY1 1161 aaPredicted RBP22.94■■□□□ 1.26
VPS28-206ENST00000526734 PLAGL2Q9UPG8 496 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 EYSQ5T1H1 3165 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 ARID2Q68CP9 1835 aa22.94■■□□□ 1.26
VPS28-206ENST00000526734 GRM6O15303 877 aa22.93■■□□□ 1.26
VPS28-206ENST00000526734 MED24O75448 989 aa22.93■■□□□ 1.26
VPS28-206ENST00000526734 CSDE1O75534 798 aaKnown RBP22.93■■□□□ 1.26
VPS28-206ENST00000526734 SRGAP2CP0DJJ0 459 aa22.93■■□□□ 1.26
VPS28-206ENST00000526734 TOB1P50616 345 aaPredicted RBP22.93■■□□□ 1.26
VPS28-206ENST00000526734 PTGDRQ13258 359 aa22.93■■□□□ 1.26
VPS28-206ENST00000526734 PIGOQ8TEQ8 1089 aa22.93■■□□□ 1.26
VPS28-206ENST00000526734 NFKBIZQ9BYH8 718 aa22.93■■□□□ 1.26
VPS28-206ENST00000526734 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.93■■□□□ 1.26
VPS28-206ENST00000526734 LRWD1Q9UFC0 647 aa22.93■■□□□ 1.26
VPS28-206ENST00000526734 PCDHB6Q9Y5E3 794 aa22.93■■□□□ 1.26
VPS28-206ENST00000526734 ZNF623O75123 536 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 AXLP30530 894 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 ARL2P36404 184 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 PTENP60484 403 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 NCBP1Q09161 790 aaKnown RBP22.92■■□□□ 1.26
VPS28-206ENST00000526734 CUL4AQ13619 759 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 IGSF22Q8N9C0 903 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 KLHL23Q8NBE8 558 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 PGBD4Q96DM1 585 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 CCDC51Q96ER9 411 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 CASD1Q96PB1 797 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 RNF19AQ9NV58 838 aa22.92■■□□□ 1.26
VPS28-206ENST00000526734 TYW1Q9NV66 732 aaKnown RBP22.92■■□□□ 1.26
VPS28-206ENST00000526734 USO1O60763 962 aaKnown RBP22.91■■□□□ 1.26
VPS28-206ENST00000526734 ERLIN2O94905 339 aa22.91■■□□□ 1.26
VPS28-206ENST00000526734 ITGB1P05556 798 aa22.91■■□□□ 1.26
VPS28-206ENST00000526734 PPM1AP35813 382 aa22.91■■□□□ 1.26
VPS28-206ENST00000526734 NBR1Q14596 966 aa22.91■■□□□ 1.26
VPS28-206ENST00000526734 LARP1BQ659C4 914 aaKnown RBP22.91■■□□□ 1.26
VPS28-206ENST00000526734 COLGALT1Q8NBJ5 622 aa22.91■■□□□ 1.26
VPS28-206ENST00000526734 RNF169Q8NCN4 708 aa22.91■■□□□ 1.26
VPS28-206ENST00000526734 UBE2ZQ9H832 354 aaPredicted RBP22.91■■□□□ 1.26
VPS28-206ENST00000526734 FAM105AQ9NUU6 356 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms