RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CETN1Q12798 172 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 PADI6Q6TGC4 694 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 INTS8Q75QN2 995 aaKnown RBP23.06■■□□□ 1.28
VPS28-205ENST00000526204 MIER3Q7Z3K6 550 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 MAATS1Q7Z4T9 603 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 DAW1Q8N136 415 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 SLC35G2Q8TBE7 412 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 PLEKHA4Q9H4M7 779 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 ZNF233A6NK53 670 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 BHMG1C9JSJ3 638 aaPredicted RBP23.05■■□□□ 1.28
VPS28-205ENST00000526204 KRT14P02533 472 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 ITGB5P18084 799 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 RXRBP28702 533 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 PTGER2P43116 358 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 ERVK-9P63128 1117 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 HLTFQ14527 1009 aaKnown RBP eCLIP23.05■■□□□ 1.28
VPS28-205ENST00000526204 DNAJC21Q5F1R6 531 aaKnown RBP23.05■■□□□ 1.28
VPS28-205ENST00000526204 CCDC26Q8TAB7 109 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 PIK3R5Q8WYR1 880 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 DBR1Q9UK59 544 aaKnown RBP23.05■■□□□ 1.28
VPS28-205ENST00000526204 EIF3HO15372 352 aaKnown RBP eCLIP23.05■■□□□ 1.28
VPS28-205ENST00000526204 TNFAIP3P21580 790 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 KIF22Q14807 665 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 EMC10Q5UCC4 262 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 FAM83AQ86UY5 434 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 LRRC45Q96CN5 670 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 ZFP91Q96JP5 570 aaPredicted RBP23.05■■□□□ 1.28
VPS28-205ENST00000526204 AP1M1Q9BXS5 423 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 KCNH7Q9NS40 1196 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 FBXO28Q9NVF7 368 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 LCMT1Q9UIC8 334 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 CCPG1Q9ULG6 757 aa23.05■■□□□ 1.28
VPS28-205ENST00000526204 RPTORQ8N122 1335 aa23.04■■□□□ 1.28
VPS28-205ENST00000526204 K7ENM7 598 aa23.04■■□□□ 1.28
VPS28-205ENST00000526204 P4HA2O15460 535 aa23.04■■□□□ 1.28
VPS28-205ENST00000526204 SAMD1Q6SPF0 538 aaPredicted RBP23.04■■□□□ 1.28
VPS28-205ENST00000526204 MCF2L2Q86YR7 1114 aa23.04■■□□□ 1.28
VPS28-205ENST00000526204 C12orf56Q8IXR9 622 aa23.04■■□□□ 1.28
VPS28-205ENST00000526204 RTKN2Q8IZC4 609 aa23.04■■□□□ 1.28
VPS28-205ENST00000526204 VEZTQ9HBM0 779 aa23.04■■□□□ 1.28
VPS28-205ENST00000526204 SMCHD1A6NHR9 2005 aa23.04■■□□□ 1.28
VPS28-205ENST00000526204 BUB1BO60566 1050 aaPredicted RBP23.03■■□□□ 1.28
VPS28-205ENST00000526204 RAD17O75943 681 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 ASNSP08243 561 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 GNGT1P63211 74 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 PPATQ06203 517 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 TRADDQ15628 312 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 CLUL1Q15846 466 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 LRIG3Q6UXM1 1119 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 HOOK2Q96ED9 719 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 ACCSQ96QU6 501 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 FEZ2Q9UHY8 353 aaPredicted RBP23.03■■□□□ 1.28
VPS28-205ENST00000526204 RBBP6Q7Z6E9 1792 aaKnown RBP23.03■■□□□ 1.28
VPS28-205ENST00000526204 ANKRD62A6NC57 917 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 LMO3Q8TAP4 145 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 NAP1L3Q99457 506 aaPredicted RBP23.03■■□□□ 1.28
VPS28-205ENST00000526204 PSMD1Q99460 953 aa23.03■■□□□ 1.28
VPS28-205ENST00000526204 SNRPFP62306 86 aaKnown RBP23.02■■□□□ 1.28
VPS28-205ENST00000526204 PPP2R5EQ16537 467 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 PTPROQ16827 1216 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 PHLDB3Q6NSJ2 640 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 MTMR14Q8NCE2 650 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 AGBL1Q96MI9 1066 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 TMEM39BQ9GZU3 492 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 DDX47Q9H0S4 455 aaKnown RBP23.02■■□□□ 1.28
VPS28-205ENST00000526204 OSGEPQ9NPF4 335 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 HMGB1P1B2RPK0 211 aaPredicted RBP23.02■■□□□ 1.28
VPS28-205ENST00000526204 DDX39AO00148 427 aaKnown RBP23.02■■□□□ 1.28
VPS28-205ENST00000526204 ECHS1P30084 290 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 KDM7AQ6ZMT4 941 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 MIGA2Q7L4E1 593 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 RHOT2Q8IXI1 618 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 PRPF38AQ8NAV1 312 aaKnown RBP23.02■■□□□ 1.28
VPS28-205ENST00000526204 RDH13Q8NBN7 331 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 FAM107BQ9H098 131 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 RASSF4Q9H2L5 321 aa23.02■■□□□ 1.28
VPS28-205ENST00000526204 GRIN2DO15399 1336 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 MAPK13O15264 365 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 DHX15O43143 795 aaKnown RBP23.01■■□□□ 1.27
VPS28-205ENST00000526204 LYPLA2O95372 231 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 PLS3P13797 630 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 VAMP7P51809 220 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 GHRHRQ02643 423 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 ARHGAP44Q17R89 818 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 LARGE2Q8N3Y3 721 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 TIPINQ9BVW5 301 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 CARD9Q9H257 536 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 ZHX2Q9Y6X8 837 aa23.01■■□□□ 1.27
VPS28-205ENST00000526204 GOLGA6L10A6NI86 522 aa23■■□□□ 1.27
VPS28-205ENST00000526204 FOXN3O00409 490 aaPredicted RBP23■■□□□ 1.27
VPS28-205ENST00000526204 ABCB4P21439 1286 aa23■■□□□ 1.27
VPS28-205ENST00000526204 QARSP47897 775 aaKnown RBP23■■□□□ 1.27
VPS28-205ENST00000526204 HADHBP55084 474 aaKnown RBP23■■□□□ 1.27
VPS28-205ENST00000526204 MAP3K10Q02779 954 aa23■■□□□ 1.27
VPS28-205ENST00000526204 PLS1Q14651 629 aa23■■□□□ 1.27
VPS28-205ENST00000526204 PCNX4Q63HM2 1172 aa23■■□□□ 1.27
VPS28-205ENST00000526204 BCAS4Q8TDM0 211 aa23■■□□□ 1.27
VPS28-205ENST00000526204 SEC14L1Q92503 715 aa23■■□□□ 1.27
VPS28-205ENST00000526204 ATP6V1G3Q96LB4 118 aa23■■□□□ 1.27
VPS28-205ENST00000526204 AGPAT1Q99943 283 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms