RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 TCAF1Q9Y4C2 921 aa5.77□□□□□ -1.49
CD44-217ENST00000525348 PPP2R3BQ9Y5P8 575 aa5.77□□□□□ -1.49
CD44-217ENST00000525348 MYPNQ86TC9 1320 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 PRSS38A1L453 326 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 PMS2P1A4D2B8 440 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 MATN3O15232 486 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 H2AFYO75367 372 aaKnown RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 PCDH8O95206 1070 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 PFKMP08237 780 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 COMTP21964 271 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 LSP1P33241 339 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 MSX2P35548 267 aaPredicted RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 SESN2P58004 480 aaPredicted RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 OCRLQ01968 901 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 TCIRG1Q13488 830 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 ZXDCQ2QGD7 858 aaPredicted RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 SPDYAQ5MJ70 313 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 BROXQ5VW32 411 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 ADGRE4PQ86SQ3 457 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 CXorf67Q86X51 503 aaPredicted RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 RABGGTAQ92696 567 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 SLC5A5Q92911 643 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 GFM2Q969S9 779 aaKnown RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 SLC7A6OSQ96CW6 309 aaPredicted RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 RPL10LQ96L21 214 aaKnown RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 NOL10Q9BSC4 688 aaKnown RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 SLC6A15Q9H2J7 730 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.76□□□□□ -1.49
CD44-217ENST00000525348 PLA2G3Q9NZ20 509 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 USP36Q9P275 1121 aaKnown RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 HECAQ9UBI9 543 aaPredicted RBP5.76□□□□□ -1.49
CD44-217ENST00000525348 TMPRSS11EQ9UL52 423 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 MYRFQ9Y2G1 1151 aa5.76□□□□□ -1.49
CD44-217ENST00000525348 MUSKO15146 869 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 TNFRSF1AP19438 455 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 ACO1P21399 889 aaKnown RBP5.75□□□□□ -1.49
CD44-217ENST00000525348 RPS19P39019 145 aaKnown RBP5.75□□□□□ -1.49
CD44-217ENST00000525348 MANFP55145 182 aaKnown RBP5.75□□□□□ -1.49
CD44-217ENST00000525348 BPIFB4P59827 614 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 STRN3Q13033 797 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 DDB1Q16531 1140 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 ATP13A4Q4VNC1 1196 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 MAMDC4Q6UXC1 1216 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 DBX2Q6ZNG2 339 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 ESPNLQ6ZVH7 1005 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 POLNQ7Z5Q5 900 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 LYSMD2Q8IV50 215 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 ZNF808Q8N4W9 903 aaPredicted RBP5.75□□□□□ -1.49
CD44-217ENST00000525348 ANKRD53Q8N9V6 530 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 PLA2G15Q8NCC3 412 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 SH3RF3Q8TEJ3 882 aaPredicted RBP5.75□□□□□ -1.49
CD44-217ENST00000525348 LPPQ93052 612 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 TMEM176AQ96HP8 235 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 ADOQ96SZ5 270 aa5.75□□□□□ -1.49
CD44-217ENST00000525348 FDXACB1Q9BRP7 624 aaPredicted RBP5.75□□□□□ -1.49
CD44-217ENST00000525348 KDM1AO60341 852 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 CLEC2LP0C7M8 214 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 PDCD1Q15116 288 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 DDX46Q7L014 1031 aaKnown RBP5.74□□□□□ -1.49
CD44-217ENST00000525348 C11orf74Q86VG3 221 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 AFAP1L2Q8N4X5 818 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 CLRN3Q8NCR9 226 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 PIK3C3Q8NEB9 887 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 PPP1R14CQ8TAE6 165 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 GCDHQ92947 438 aaPredicted RBP5.74□□□□□ -1.49
CD44-217ENST00000525348 USP7Q93009 1102 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 FERMT2Q96AC1 680 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 FAM126AQ9BYI3 521 aaPredicted RBP5.74□□□□□ -1.49
CD44-217ENST00000525348 ANO3Q9BYT9 981 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 NELFAQ9H3P2 528 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 CAAP1Q9H8G2 361 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 MSL2Q9HCI7 577 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 TESMINQ9Y4I5 508 aa5.74□□□□□ -1.49
CD44-217ENST00000525348 PLSCR1O15162 318 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 TOX4O94842 621 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 GAAP10253 952 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 GRM7Q14831 915 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 EGFLAMQ63HQ2 1017 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 SPTY2D1Q68D10 685 aaPredicted RBP5.73□□□□□ -1.49
CD44-217ENST00000525348 LHFPL2Q6ZUX7 228 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 SLC41A1Q8IVJ1 513 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 EDAQ92838 391 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 SLKQ9H2G2 1235 aaPredicted RBP5.73□□□□□ -1.49
CD44-217ENST00000525348 IFT22Q9H7X7 185 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 TOPORSQ9NS56 1045 aaPredicted RBP5.73□□□□□ -1.49
CD44-217ENST00000525348 USP18Q9UMW8 372 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 PCDHB6Q9Y5E3 794 aa5.73□□□□□ -1.49
CD44-217ENST00000525348 A0A1W2PRX2 142 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 SEC24DO94855 1032 aaPredicted RBP5.72□□□□□ -1.49
CD44-217ENST00000525348 VSIG10L2P0DP72 767 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 POU3F3P20264 500 aaPredicted RBP5.72□□□□□ -1.49
CD44-217ENST00000525348 CD69Q07108 199 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 TRIM25Q14258 630 aaKnown RBP5.72□□□□□ -1.49
CD44-217ENST00000525348 HS1BP3Q53T59 392 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 TAF7LQ5H9L4 462 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 FRMD7Q6ZUT3 714 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 GAREM2Q75VX8 874 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 CDYL2Q8N8U2 506 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 CHAC2Q8WUX2 184 aa5.72□□□□□ -1.49
CD44-217ENST00000525348 HIST1H2AHQ96KK5 128 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms